From 1eb29046adaf04b6f4daef9b5a057f564d6b6608 Mon Sep 17 00:00:00 2001
From: Peter Ebert <pebert@mpi-inf.mpg.de>
Date: Fri, 30 Dec 2016 15:29:33 +0100
Subject: [PATCH] FIX: description section duplicated in document

---
 docs/misc/DCCdl.xml |  9 ++++-----
 docs/misc/DCCul.xml | 13 ++++++-------
 2 files changed, 10 insertions(+), 12 deletions(-)

diff --git a/docs/misc/DCCdl.xml b/docs/misc/DCCdl.xml
index a5df77f..9d78154 100644
--- a/docs/misc/DCCdl.xml
+++ b/docs/misc/DCCdl.xml
@@ -20,7 +20,7 @@
 			<comment>Nightly sync from DCC</comment>
 		</filetype>
 	</inputs>
-	<!-- Following section: list reference files [e.g. reference genomes] used in this process -->
+
 	<references>
 		<filetype>
 			<identifier>no_ref</identifier>
@@ -29,7 +29,7 @@
 			<comment>No key file necessary for sync; auth via user/pw</comment>
 		</filetype>
 	</references>
-	<!-- Following section: list output files of process [e.g. bed files, wiggle tracks] -->
+
 	<outputs>
 		<filetype>
 			<identifier>TARGETFOLDER</identifier>
@@ -38,9 +38,7 @@
 			<comment>Dump to DEEP cluster - FhGFS - data/incoming/mirror</comment>
 		</filetype>
 	</outputs>
-	<!-- Precise description of what this process does, what output is generated and what statistics are computed -->
-	<description>
-	</description>
+
 	<software>
 		<tool>
 			<name>ascp</name>
@@ -51,6 +49,7 @@
 					${USERNAME}@dkfzaspera.dkfz-heidelberg.de:${SRCFOLDER} ${TARGETFOLDER}
 				]]>
 			</command_line>
+			<loop>no looping</loop>
 			<comment>Sync happens via cron job running on deep01 (user: oracle11)</comment>
 		</tool>
 	</software>
diff --git a/docs/misc/DCCul.xml b/docs/misc/DCCul.xml
index 20d8eaa..981a69e 100644
--- a/docs/misc/DCCul.xml
+++ b/docs/misc/DCCul.xml
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <?xml-stylesheet type="text/css" href="http://deep.mpi-inf.mpg.de/DAC/files/style/deep_process_style.css"?>
 <process>
-	<!-- Version of process is incremented by one in case of a new data freeze iff process [software] changed -->
+
 	<name>DCC</name>
 	<version>1</version>
 	<author>
@@ -13,7 +13,7 @@
 		DAC-internal tracking database (i.e., all files uploaded from the DAC to the DCC
 		are eventually input to this process/analysis).
 	</description>
-	<!-- Following section: list input files [samples to be analysed and similar] -->
+
 	<inputs>
 		<filetype>
 			<identifier>UPLOADFILE</identifier>
@@ -22,7 +22,7 @@
 			<comment>By default, md5 checksum is also uploaded</comment>
 		</filetype>
 	</inputs>
-	<!-- Following section: list reference files [e.g. reference genomes] used in this process -->
+
 	<references>
 		<filetype>
 			<identifier>no_ref</identifier>
@@ -31,7 +31,7 @@
 			<comment>No key file necessary for sync; auth via user/pw</comment>
 		</filetype>
 	</references>
-	<!-- Following section: list output files of process [e.g. bed files, wiggle tracks] -->
+
 	<outputs>
 		<filetype>
 			<identifier>ad_acta</identifier>
@@ -40,9 +40,7 @@
 			<comment>Successful upload checked manually, log files discarded</comment>
 		</filetype>
 	</outputs>
-	<!-- Precise description of what this process does, what output is generated and what statistics are computed -->
-	<description>
-	</description>
+
 	<software>
 		<tool>
 			<name>ascp</name>
@@ -53,6 +51,7 @@
 					${USERNAME}@dkfzaspera.dkfz-heidelberg.de:/upload
 				]]>
  			</command_line>
+			<loop>no looping</loop>
 			<comment>
 				NB: the upload folder is rw only for the respective user account and the DMG.
 				To share data immediately with other groups, it has to be uploaded to /share