diff --git a/conda_env/chpv5.yml b/conda_env/chpv5.yml new file mode 100644 index 0000000..c6599b1 --- /dev/null +++ b/conda_env/chpv5.yml @@ -0,0 +1,22 @@ +name: CHPv5 +channels: + - conda-forge + - bioconda + - r +dependencies: + - python=2.7.13 + - sambamba=0.6.6 + - bedtools=2.26.0 + - deeptools=2.5.3 + - macs2=2.1.1.20160309 + - r-base=3.3.2 + - r-rcpp=0.12.8 + - r-devtools=1.13.2 + - r-r.utils + - r-optparse + - bioconductor-genomicranges=1.26.4 + - bioconductor-rsamtools=1.26.1 + # most recent version of histoneHMM 1.7 not available via Bioconda + # Install manually: + # options("unzip"="internal") + # devtools::install_github("matthiasheinig/histoneHMM")