From b1725b73a61b7a359e604831e1a839d8c83d5e6b Mon Sep 17 00:00:00 2001 From: Peter Ebert Date: Fri, 30 Dec 2016 14:29:11 +0100 Subject: [PATCH] DOC: added link to DEEP data portal --- README.md | 12 ++++++++---- 1 file changed, 8 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 6f3f263..bd8d420 100644 --- a/README.md +++ b/README.md @@ -18,7 +18,7 @@ provides a step-by-step description of the computational analysis. [Proceed to Process documents](docs/) -## Creating and validating new *Process* documents +## Creating and validating new Process documents If you want to document a new analysis type, i.e., a standardized pipeline, or if you just want to document an analysis specific for a DEEP publication, you can download the *Process* template file @@ -28,11 +28,15 @@ and some basic introductory material in this repository: ## Analysis documentation -Each run of a standardized pipeline produces an *Analysis* metadata document at the end. These are simple tab-separated -text files listing all input, output and reference files as well as non-default parameters in form of *key-value* -entries. Whereas a *Process* document has to be manually created and describes an analysis pipeline in generic form, +Each run of a standardized pipeline is supposed to produce an *Analysis* metadata document at the end +(named like this: `DEEP-ID.PROCESS.DATE.amd.tsv`). These are simple tab-separated text files listing all input, +output and reference files as well as non-default parameters in form of *key-value* entries. +Whereas a *Process* document has to be manually created and describes an analysis pipeline in generic form, an *Analysis* metadata file is created automatically. Consequently, these files are not accessible via this repository. +If you are looking for the *Analysis* metadata files, please refer to the official [DEEP data portal](http://deep.dkfz.de) hosted +by the DEEP *Data Collection Center* (DCC - DKFZ Heidelberg). + ## References See the corresponding publication in Oxford Database for details: