From 45488268c30683836d210104cb1c46720a980f69 Mon Sep 17 00:00:00 2001 From: renewiegandt Date: Mon, 16 Jul 2018 13:14:14 +0200 Subject: [PATCH] removing redundant :: import --- tests/testthat/test_mqparser.R | 20 ++++++++------------ 1 file changed, 8 insertions(+), 12 deletions(-) diff --git a/tests/testthat/test_mqparser.R b/tests/testthat/test_mqparser.R index 616056c..be5acd9 100644 --- a/tests/testthat/test_mqparser.R +++ b/tests/testthat/test_mqparser.R @@ -1,29 +1,25 @@ context("MaxQuant parser") test_that("all needed input parameteres are given", { - expect_error(wilson::parse_MaxQuant(), "The proteinGroups file was not given") - expect_error(wilson::parse_MaxQuant(proteinGroups_in = "./path/path/"), "The summary file was not given") - expect_error(wilson::parse_MaxQuant(proteinGroups_in = "./path/path/", summary_in = "./path/path/"), + expect_error(parse_MaxQuant(), "The proteinGroups file was not given") + expect_error(parse_MaxQuant(proteinGroups_in = "./path/path/"), "The summary file was not given") + expect_error(parse_MaxQuant(proteinGroups_in = "./path/path/", summary_in = "./path/path/"), "The output file was not given") - expect_error(wilson::parse_MaxQuant(proteinGroups_in = "./path/path/", summary_in = "./path/path/", + expect_error(parse_MaxQuant(proteinGroups_in = "./path/path/", summary_in = "./path/path/", outfile = "./path/path/"), "The output_reduced file was not given") }) test_that("mq_parser", { - expect_error(wilson::parse_MaxQuant(proteinGroups_in = "proteinGroups_test.txt", - summary_in = "summary_test_2.txt", + expect_error(parse_MaxQuant(proteinGroups_in = "proteinGroups_test.txt", summary_in = "summary_test_2.txt", outfile = "./out", outfile_reduced = "./outres" ), "wrong format on summary file: column \'Experiment\' misssing") - expect_true(wilson::parse_MaxQuant(proteinGroups_in = "proteinGroups_test.txt", - summary_in = "summary_test.txt", + expect_true(parse_MaxQuant(proteinGroups_in = "proteinGroups_test.txt", summary_in = "summary_test.txt", outfile = "./out", outfile_reduced = "./outres", config = "success_config.json")) - expect_error(wilson::parse_MaxQuant(proteinGroups_in = "proteinGroups_test.txt", - summary_in = "summary_test.txt", + expect_error(parse_MaxQuant(proteinGroups_in = "proteinGroups_test.txt", summary_in = "summary_test.txt", outfile = "./out", outfile_reduced = "./outres", config = "" ), "Could not read config file") - expect_error(wilson::parse_MaxQuant(proteinGroups_in = "proteinGroups_test.txt", - summary_in = "summary_test.txt", + expect_error(parse_MaxQuant(proteinGroups_in = "proteinGroups_test.txt", summary_in = "summary_test.txt", outfile = "./out", outfile_reduced = "./outres", config = "fail_config.json" ), "reduced_list is missing in config file") })