diff --git a/.Rbuildignore b/.Rbuildignore new file mode 100644 index 0000000..4d88d31 --- /dev/null +++ b/.Rbuildignore @@ -0,0 +1,3 @@ +^.*\.Rproj$ +^\.Rproj\.user$ +^\.buildkite.* diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml new file mode 100644 index 0000000..ffb3106 --- /dev/null +++ b/.buildkite/pipeline.yml @@ -0,0 +1,13 @@ +steps: + - label: "Build Conda-environment" + command: +# - "conda env create -f .buildkite/wilson-env.yml --force" + - ". /etc/profile.d/conda.sh" + - "conda activate wilson" +# - "Rscript -e 'install.packages(\"rje\")'" + - "Rscript -e 'devtools::check()'" + +# - wait + +# - label: "Package check" +# command: diff --git a/.buildkite/wilson-env.yml b/.buildkite/wilson-env.yml new file mode 100644 index 0000000..32b23f0 --- /dev/null +++ b/.buildkite/wilson-env.yml @@ -0,0 +1,46 @@ +name: wilson +channels: + - defaults + - conda-forge + - bioconda +dependencies: + - r-base + - r-shiny + - r-data.table + - r-ggplot2 + - r-plotly + - r-scales + - r-shinydashboard + - "r-dt>=0.3" + - r-colourpicker + - r-RColorBrewer + - r-shinyjs + - r-viridis +# - r-rje +# - r-grdevices # base package +# - r-grid # base package + - r-plyr + - r-circlize + - bioconductor-complexheatmap +# - r-stats # base package + - r-gplots + - r-reshape + - r-rintrojs + - r-webshot + - r-rjsonio + - "r-ggrepel>=0.6.12" + - bioconductor-deseq2 + - r-rjson + - r-factominer + - r-factoextra + - "r-heatmaply>=0.14.1" + - r-shinythemes + - r-shinycssloaders + - r-log4r + - r-openssl +# - r-methods # base package + - r-r6 + - r-devtools + - "readline==6.3" + - r-roxygen2 + - r-shinybs