From ff84ea8208b50ceb1fec7e568a4cea16e444f352 Mon Sep 17 00:00:00 2001
From: Georgi Tushev <georgi.handzhiyski@gmail.com>
Date: Thu, 13 Oct 2016 17:24:04 +0200
Subject: [PATCH] fixed 1-based position at negative strand

---
 htsutils.c | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/htsutils.c b/htsutils.c
index eb61e7a..76a9911 100644
--- a/htsutils.c
+++ b/htsutils.c
@@ -86,7 +86,7 @@ void hts_parse(hts_config_t *hts, aux_config_t *aux)
             polySize_tail = findPoly(hts->bam, 'T', POLY_HEAD);
             
             // define last base
-            base = hts->bam->core.pos;
+            base = hts->bam->core.pos + 1;
         }
         else
         {