From a6e74dd06f832e2d21d5e597a9658414dd183948 Mon Sep 17 00:00:00 2001
From: Georgi Tushev <georgi.tushev@brain.mpg.de>
Date: Tue, 23 Oct 2018 10:56:06 +0200
Subject: [PATCH] fix outStd Log tag

---
 batchAlignment.pl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/batchAlignment.pl b/batchAlignment.pl
index 163ff05..585f942 100644
--- a/batchAlignment.pl
+++ b/batchAlignment.pl
@@ -87,7 +87,7 @@ ($$$$)
     " --runMode alignReads" .
     " --genomeDir $path_genome_index" .
     " --readFilesCommand zcat" .
-    " --outStdLog" .
+    " --outStd Log" .
     " --outSAMtype BAM SortedByCoordinate" .
     " --outSAMstrandField intronMotif" .
     " --outFilterIntronMotifs RemoveNoncanonical" .