diff --git a/functions/CellSortLoadTrials.m b/functions/CellSortLoadTrials.m index 31d731c..c292008 100644 --- a/functions/CellSortLoadTrials.m +++ b/functions/CellSortLoadTrials.m @@ -51,9 +51,8 @@ reference = mean(data_r_array, 3); qualityPlot = zeros(1,size(data_r_array, 3)); parfor i = 1:size(data_r_array,3) - qualityPlot(i) = squeeze(mean(mean(data_r_array(:,:,i) - reference,1),2)); + qualityPlot(i) = squeeze(mean(mean((data_r_array(:,:,i) - reference).^2,1),2)); end -qualityPlot = qualityPlot.^2; figure; plot(qualityPlot); for i=1:numberGreen diff --git a/functions/CellSortLoadTrialsShiftCorrOnTrials.m b/functions/CellSortLoadTrialsShiftCorrOnTrials.m index b548146..167442a 100644 --- a/functions/CellSortLoadTrialsShiftCorrOnTrials.m +++ b/functions/CellSortLoadTrialsShiftCorrOnTrials.m @@ -54,9 +54,8 @@ reference = mean(data_r_array, 3); qualityPlot = zeros(1,size(data_r_array, 3)); parfor i = 1:size(data_r_array,3) - qualityPlot(i) = squeeze(mean(mean(data_r_array(:,:,i) - reference,1),2)); + qualityPlot(i) = squeeze(mean(mean((data_r_array(:,:,i) - reference).^2,1),2)); end -qualityPlot = qualityPlot.^2; figure; plot(qualityPlot); for i=1:numberGreen diff --git a/main.m b/main.m index a29b2b5..271c358 100644 --- a/main.m +++ b/main.m @@ -11,7 +11,7 @@ CellSortXCorr(inFolder, outFolder, nSubIm, binningFactor); %% load files %go to corr folder -outFolder = 'F:\Arbeit\testData\PCAICA'; +outFolder = 'C:\Users\ftvol\Desktop\data'; %shifft correction on all frames %[data_g, data_r, frames, fn_green, fn_red, fileNamesGreen, fileNamesRed] = CellSortLoadTrials(outFolder); %shift correction only on trials