diff --git a/functions/CellSortLoadTrialsShiftCorrOnTrials.m b/functions/CellSortLoadTrialsShiftCorrOnTrials.m index 7f56cac..73a4e03 100644 --- a/functions/CellSortLoadTrialsShiftCorrOnTrials.m +++ b/functions/CellSortLoadTrialsShiftCorrOnTrials.m @@ -51,4 +51,13 @@ end disp('Finished Loading Trial Files!'); +%calculate quality plot +reference = mean(data_r_array, 3); +qualityPlot = zeros(1,size(data_r_array, 3)); +parfor i = 1:size(data_r_array,3) + qualityPlot(i) = squeeze(mean(mean(data_r_array(:,:,i) - reference,1),2)); +end +qualityPlot = qualityPlot.^2; +figure; +plot(qualityPlot); end \ No newline at end of file diff --git a/main.m b/main.m index 1ace0e6..dc8a9b4 100644 --- a/main.m +++ b/main.m @@ -11,7 +11,7 @@ CellSortXCorr(inFolder, outFolder, nSubIm, binningFactor); %% load files %go to corr folder -outFolder = 'F:\Arbeit\testData\PCAICA'; +outFolder = 'C:\Users\ftvol\Desktop\data'; %[data_g, data_r, frames, fn_green, fn_red, fileNamesGreen, fileNamesRed] = CellSortLoadTrials(outFolder); [data_g, data_r, frames, fn_green, fn_red, fileNamesGreen, fileNamesRed] = CellSortLoadTrialsShiftCorrOnTrials(outFolder); %If you want to load single files, use the functions below.