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IsoTV/environment.yaml
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| name: isotv_env | |
| channels: | |
| - sagrudd | |
| - bioconda | |
| - defaults | |
| - conda-forge | |
| dependencies: | |
| - _libgcc_mutex=0.1=conda_forge | |
| - _openmp_mutex=4.5=1_llvm | |
| - _r-mutex=1.0.0=anacondar_1 | |
| - aioeasywebdav=2.4.0=py37h89c1867_1001 | |
| - aiohttp=3.7.4=py37h27cfd23_1 | |
| - amply=0.1.4=py_0 | |
| - appdirs=1.4.4=py_0 | |
| - async-timeout=3.0.1=py37h06a4308_0 | |
| - atk-1.0=2.36.0=h28cd5cc_0 | |
| - attmap=0.13.0=pyhd8ed1ab_0 | |
| - attrs=20.3.0=pyhd3eb1b0_0 | |
| - bcrypt=3.2.0=py37h7b6447c_0 | |
| - bioconductor-annotate=1.50.0=0 | |
| - bioconductor-annotationdbi=1.32.3=0 | |
| - bioconductor-biobase=2.32.0=0 | |
| - bioconductor-biocgenerics=0.18.0=r3.2.2_0 | |
| - bioconductor-biocparallel=1.4.3=r3.2.2_0 | |
| - bioconductor-deseq2=1.10.1=r3.2.2_0 | |
| - bioconductor-genefilter=1.52.1=r3.2.2_0 | |
| - bioconductor-geneplotter=1.48.0=0 | |
| - bioconductor-genomeinfodb=1.6.3=0 | |
| - bioconductor-genomicranges=1.22.4=0 | |
| - bioconductor-iranges=2.4.8=0 | |
| - bioconductor-s4vectors=0.8.11=0 | |
| - bioconductor-summarizedexperiment=1.0.2=1 | |
| - bioconductor-xvector=0.8.0=0 | |
| - biopython=1.78=py37h5e8e339_2 | |
| - blas=2.106=openblas | |
| - boto=2.49.0=py37_0 | |
| - boto3=1.17.27=pyhd3eb1b0_0 | |
| - botocore=1.20.29=pyhd3eb1b0_1 | |
| - brotlipy=0.7.0=py37h27cfd23_1003 | |
| - bzip2=1.0.8=h7b6447c_0 | |
| - ca-certificates=2021.1.19=h06a4308_1 | |
| - cachetools=4.2.1=pyhd3eb1b0_0 | |
| - cairo=1.16.0=hf32fb01_1 | |
| - certifi=2020.12.5=py37h06a4308_0 | |
| - cffi=1.14.5=py37h261ae71_0 | |
| - chardet=3.0.4=py37h06a4308_1003 | |
| - coincbc=2.10.5=hcee13e7_1 | |
| - configargparse=1.4=pyhd3eb1b0_0 | |
| - cryptography=3.4.6=py37hd23ed53_0 | |
| - cycler=0.10.0=py37_0 | |
| - datrie=0.8.2=py37h27cfd23_0 | |
| - decorator=4.4.2=pyhd3eb1b0_0 | |
| - docutils=0.16=py37_1 | |
| - dropbox=10.10.0=py37h06a4308_0 | |
| - expat=2.2.10=he6710b0_2 | |
| - fftw=3.3.9=h27cfd23_1 | |
| - filechunkio=1.8=py_2 | |
| - filelock=3.0.12=pyhd3eb1b0_1 | |
| - filtlong=0.2.0=he513fc3_3 | |
| - font-ttf-dejavu-sans-mono=2.37=h6964260_0 | |
| - font-ttf-inconsolata=2.001=hcb22688_0 | |
| - font-ttf-source-code-pro=2.030=h7457263_0 | |
| - font-ttf-ubuntu=0.83=h8b1ccd4_0 | |
| - fontconfig=2.13.1=hba837de_1004 | |
| - fonts-conda-ecosystem=1=0 | |
| - fonts-conda-forge=1=0 | |
| - freetype=2.10.4=h5ab3b9f_0 | |
| - fribidi=1.0.10=h7b6447c_0 | |
| - ftputil=5.0.1=pyhd8ed1ab_0 | |
| - gdk-pixbuf=2.42.2=h0c95a7a_2 | |
| - gettext=0.19.8.1=h9b4dc7a_1 | |
| - gffcompare=0.11.2=hc9558a2_1 | |
| - ghostscript=9.18=1 | |
| - giflib=5.2.1=h7b6447c_0 | |
| - gitdb=4.0.5=py_0 | |
| - gitpython=3.1.14=pyhd3eb1b0_1 | |
| - glib=2.68.0=h9c3ff4c_1 | |
| - glib-tools=2.68.0=h9c3ff4c_1 | |
| - gobject-introspection=1.67.1=py37h2109141_1 | |
| - google-api-core=1.25.1=pyhd3eb1b0_0 | |
| - google-api-python-client=2.0.2=pyhd8ed1ab_0 | |
| - google-auth=1.28.0=pyhd3eb1b0_0 | |
| - google-auth-httplib2=0.0.4=pyh9f0ad1d_0 | |
| - google-cloud-core=1.6.0=pyhd3eb1b0_0 | |
| - google-cloud-storage=1.19.0=py_0 | |
| - google-crc32c=1.1.2=py37h27cfd23_0 | |
| - google-resumable-media=1.2.0=pyhd3eb1b0_1 | |
| - googleapis-common-protos=1.52.0=py37h06a4308_0 | |
| - graphite2=1.3.14=h23475e2_0 | |
| - graphviz=2.47.0=h93c640b_0 | |
| - gsl=2.4=h14c3975_4 | |
| - gtk2=2.24.33=hab0c2f8_0 | |
| - gts=0.7.6=h64030ff_2 | |
| - harfbuzz=2.8.0=h83ec7ef_0 | |
| - hhsuite=3.3.0=py37pl526hfa133b6_1 | |
| - hmmer=3.3.2=he1b5a44_0 | |
| - httplib2=0.19.0=pyhd8ed1ab_0 | |
| - icu=68.1=h2531618_0 | |
| - idna=2.10=pyhd3eb1b0_0 | |
| - imagemagick=7.0.11_3=pl5320hb503478_0 | |
| - importlib-metadata=3.7.3=py37h06a4308_1 | |
| - importlib_metadata=3.7.3=hd3eb1b0_1 | |
| - iniconfig=1.1.1=pyhd3eb1b0_0 | |
| - ipython_genutils=0.2.0=pyhd3eb1b0_1 | |
| - jbig=2.1=hdba287a_0 | |
| - jinja2=2.11.3=pyhd3eb1b0_0 | |
| - jmespath=0.10.0=py_0 | |
| - jpeg=9d=h36c2ea0_0 | |
| - jsonschema=3.2.0=py_2 | |
| - jupyter_core=4.7.1=py37h06a4308_0 | |
| - k8=0.2.5=he513fc3_0 | |
| - kiwisolver=1.3.1=py37h2531618_0 | |
| - lcms2=2.11=h396b838_0 | |
| - ld_impl_linux-64=2.33.1=h53a641e_7 | |
| - libblas=3.9.0=6_openblas | |
| - libcblas=3.9.0=6_openblas | |
| - libcrc32c=1.1.1=he6710b0_2 | |
| - libffi=3.3=he6710b0_2 | |
| - libgcc=7.2.0=h69d50b8_2 | |
| - libgcc-ng=9.3.0=h2828fa1_18 | |
| - libgd=2.3.0=h47910db_1 | |
| - libgfortran-ng=9.3.0=hff62375_18 | |
| - libgfortran5=9.3.0=hff62375_18 | |
| - libglib=2.68.0=h3e27bee_1 | |
| - libiconv=1.16=h516909a_0 | |
| - liblapack=3.9.0=6_openblas | |
| - liblapacke=3.9.0=6_openblas | |
| - libopenblas=0.3.12=pthreads_h4812303_1 | |
| - libpng=1.6.37=hbc83047_0 | |
| - libprotobuf=3.14.0=h8c45485_0 | |
| - librsvg=2.50.3=hfa39831_1 | |
| - libsodium=1.0.18=h7b6447c_0 | |
| - libstdcxx-ng=9.3.0=h6de172a_18 | |
| - libtiff=4.2.0=h3942068_0 | |
| - libtool=2.4.6=h7b6447c_1005 | |
| - libuuid=2.32.1=h7f98852_1000 | |
| - libwebp=1.2.0=h89dd481_0 | |
| - libwebp-base=1.2.0=h27cfd23_0 | |
| - libxcb=1.14=h7b6447c_0 | |
| - libxml2=2.9.10=h72842e0_3 | |
| - llvm-openmp=11.1.0=h4bd325d_0 | |
| - logmuse=0.2.6=pyh8c360ce_0 | |
| - lz4-c=1.9.3=h2531618_0 | |
| - markupsafe=1.1.1=py37h14c3975_1 | |
| - matplotlib-base=3.3.4=py37h62a2d02_0 | |
| - minimap2=2.17=hed695b0_3 | |
| - more-itertools=8.7.0=pyhd3eb1b0_0 | |
| - multidict=5.1.0=py37h27cfd23_2 | |
| - nbformat=5.1.2=pyhd3eb1b0_1 | |
| - ncurses=6.2=he6710b0_1 | |
| - networkx=2.5=py_0 | |
| - ninja=1.10.2=py37hff7bd54_0 | |
| - numpy=1.19.2=py37h6163131_0 | |
| - numpy-base=1.19.2=py37h75fe3a5_0 | |
| - oauth2client=4.1.3=py_0 | |
| - olefile=0.46=py37_0 | |
| - openjpeg=2.4.0=hf7af979_0 | |
| - openssl=1.1.1j=h27cfd23_0 | |
| - packaging=20.9=pyhd3eb1b0_0 | |
| - pandas=1.2.3=py37ha9443f7_0 | |
| - pango=1.42.4=h69149e4_5 | |
| - paramiko=2.7.2=py_0 | |
| - parasail-python=1.2.4=py37h13b99d1_0 | |
| - patsy=0.5.1=py37_0 | |
| - pcre=8.44=he6710b0_0 | |
| - peppy=0.31.0=pyh9f0ad1d_0 | |
| - perl=5.26.2=h14c3975_0 | |
| - pillow=8.1.2=py37he98fc37_0 | |
| - pinfish=200316=2bc39d4_1 | |
| - pip=21.0.1=py37h06a4308_0 | |
| - pixman=0.40.0=h7b6447c_0 | |
| - pkg-config=0.29.2=h1bed415_8 | |
| - pluggy=0.13.1=py37h06a4308_0 | |
| - prettytable=2.1.0=pyhd8ed1ab_0 | |
| - protobuf=3.14.0=py37h2531618_1 | |
| - psutil=5.8.0=py37h27cfd23_1 | |
| - pulp=2.4=py37h89c1867_0 | |
| - py=1.10.0=pyhd3eb1b0_0 | |
| - pyasn1=0.4.8=py_0 | |
| - pyasn1-modules=0.2.8=py_0 | |
| - pychopper=2.5.0=py_0 | |
| - pycparser=2.20=py_2 | |
| - pygments=2.8.1=pyhd3eb1b0_0 | |
| - pygraphviz=1.7=py37h0b1d2a2_0 | |
| - pynacl=1.4.0=py37h7b6447c_1 | |
| - pyopenssl=20.0.1=pyhd3eb1b0_1 | |
| - pyparsing=2.4.7=pyhd3eb1b0_0 | |
| - pyrsistent=0.17.3=py37h7b6447c_0 | |
| - pysftp=0.2.9=py_1 | |
| - pysocks=1.7.1=py37_1 | |
| - pytest=6.2.2=py37h06a4308_2 | |
| - python=3.7.7=hcff3b4d_5 | |
| - python-dateutil=2.8.1=pyhd3eb1b0_0 | |
| - python-edlib=1.3.8.post2=py37h9a982cc_0 | |
| - python-irodsclient=0.8.6=pyhd8ed1ab_0 | |
| - python_abi=3.7=1_cp37m | |
| - pytz=2021.1=pyhd3eb1b0_0 | |
| - pyyaml=5.4.1=py37h27cfd23_1 | |
| - r=3.2.2=0 | |
| - r-acepack=1.3_3.3=r3.2.2_1a | |
| - r-base=3.2.2=0 | |
| - r-boot=1.3_17=r3.2.2_0a | |
| - r-class=7.3_14=r3.2.2_0a | |
| - r-cluster=2.0.3=r3.2.2_0a | |
| - r-codetools=0.2_14=r3.2.2_0a | |
| - r-colorspace=1.2_6=r3.2.2_0a | |
| - r-dbi=0.3.1=r3.2.2_2a | |
| - r-dichromat=2.0_0=r3.2.2_2a | |
| - r-digest=0.6.9=r3.2.2_0 | |
| - r-foreign=0.8_66=r3.2.2_0a | |
| - r-formula=1.2_1=r3.2.2_0a | |
| - r-futile.logger=1.4.1=r3.2.2_0 | |
| - r-futile.options=1.0.0=r3.2.2_0 | |
| - r-ggplot2=2.1.0=r3.2.2_0 | |
| - r-gridextra=2.0.0=r3.2.2_0a | |
| - r-gtable=0.1.2=r3.2.2_2a | |
| - r-hmisc=3.17_0=r3.2.2_0a | |
| - r-kernsmooth=2.23_15=r3.2.2_0a | |
| - r-labeling=0.3=r3.2.2_1a | |
| - r-lambda.r=1.1.7=r3.2.2_0 | |
| - r-lattice=0.20_33=r3.2.2_0a | |
| - r-latticeextra=0.6_26=r3.2.2_2a | |
| - r-locfit=1.5_9.1=r3.2.2_0 | |
| - r-magrittr=1.5=r3.2.2_0 | |
| - r-mass=7.3_45=r3.2.2_0a | |
| - r-matrix=1.2_2=r3.2.2_0a | |
| - r-mgcv=1.8_9=r3.2.2_0a | |
| - r-munsell=0.4.2=r3.2.2_1a | |
| - r-nlme=3.1_122=r3.2.2_0a | |
| - r-nnet=7.3_11=r3.2.2_0a | |
| - r-plyr=1.8.3=r3.2.2_0a | |
| - r-proto=0.3_10=r3.2.2_1a | |
| - r-rcolorbrewer=1.1_2=r3.2.2_2a | |
| - r-rcpp=0.12.2=r3.2.2_0a | |
| - r-rcpparmadillo=0.6.200.2.0=r3.2.2_0a | |
| - r-recommended=3.2.2=r3.2.2_0 | |
| - r-reshape2=1.4.1=r3.2.2_1a | |
| - r-rpart=4.1_10=r3.2.2_0a | |
| - r-rsqlite=1.0.0=r3.2.2_1a | |
| - r-scales=0.3.0=r3.2.2_0a | |
| - r-snow=0.4_1=r3.2.2_0 | |
| - r-spatial=7.3_11=r3.2.2_0a | |
| - r-stringi=1.0_1=r3.2.2_0a | |
| - r-stringr=1.0.0=r3.2.2_0a | |
| - r-survival=2.38_3=r3.2.2_0a | |
| - r-xml=3.98_1.3=r3.2.2_0a | |
| - r-xtable=1.8_0=r3.2.2_0a | |
| - racon=1.4.20=he513fc3_0 | |
| - ratelimiter=1.2.0=py_1002 | |
| - readline=8.1=h27cfd23_0 | |
| - requests=2.25.1=pyhd3eb1b0_0 | |
| - rsa=4.7.2=pyhd3eb1b0_1 | |
| - s3transfer=0.3.4=pyhd3eb1b0_0 | |
| - scipy=1.6.1=py37h14a347d_0 | |
| - seaborn=0.11.1=hd8ed1ab_1 | |
| - seaborn-base=0.11.1=pyhd8ed1ab_1 | |
| - setuptools=52.0.0=py37h06a4308_0 | |
| - simplejson=3.17.2=py37h27cfd23_2 | |
| - six=1.15.0=py37h06a4308_0 | |
| - slacker=0.14.0=py_0 | |
| - smart_open=4.2.0=pyhd3eb1b0_0 | |
| - smmap=3.0.5=pyhd3eb1b0_0 | |
| - snakemake=6.0.5=0 | |
| - snakemake-minimal=6.0.5=py_0 | |
| - sqlite=3.35.1=hdfb4753_0 | |
| - statsmodels=0.12.2=py37h27cfd23_0 | |
| - tk=8.6.10=hbc83047_0 | |
| - toml=0.10.1=py_0 | |
| - toposort=1.6=pyhd8ed1ab_0 | |
| - tornado=6.1=py37h27cfd23_0 | |
| - tqdm=4.59.0=pyhd3eb1b0_1 | |
| - traitlets=5.0.5=pyhd3eb1b0_0 | |
| - typing-extensions=3.7.4.3=hd3eb1b0_0 | |
| - typing_extensions=3.7.4.3=pyh06a4308_0 | |
| - ubiquerg=0.6.1=pyh9f0ad1d_0 | |
| - uritemplate=3.0.1=py_0 | |
| - urllib3=1.26.4=pyhd3eb1b0_0 | |
| - veracitools=0.1.3=py_0 | |
| - wcwidth=0.2.5=py_0 | |
| - wheel=0.36.2=pyhd3eb1b0_0 | |
| - wrapt=1.12.1=py37h7b6447c_1 | |
| - xmlrunner=1.7.7=py_0 | |
| - xorg-kbproto=1.0.7=h7f98852_1002 | |
| - xorg-libice=1.0.10=h7f98852_0 | |
| - xorg-libsm=1.2.3=hd9c2040_1000 | |
| - xorg-libx11=1.7.0=h7f98852_0 | |
| - xorg-libxau=1.0.9=h7f98852_0 | |
| - xorg-libxext=1.3.4=h7f98852_1 | |
| - xorg-libxrender=0.9.10=h7f98852_1003 | |
| - xorg-libxt=1.2.1=h7f98852_2 | |
| - xorg-renderproto=0.11.1=h7f98852_1002 | |
| - xorg-xextproto=7.3.0=h7f98852_1002 | |
| - xorg-xproto=7.0.31=h27cfd23_1007 | |
| - xz=5.2.5=h7b6447c_0 | |
| - yaml=0.2.5=h7b6447c_0 | |
| - yarl=1.6.3=py37h27cfd23_0 | |
| - zipp=3.4.1=pyhd3eb1b0_0 | |
| - zlib=1.2.11=h7b6447c_3 | |
| - zstd=1.4.5=h9ceee32_0 |