parameter_template.in

# sampleID: necessary for naming the output files
# example: sampleID=AB01 
sampleID=

# condition: necessary for naming the output files
# example: condition=treated
condition=

# NetSeqApp: provide full path to the NeqSeqPipeline directory + name of the application executable
# example: NetSeqApp=/pathToFolderContainingPipeline/NetSeqPipeline
NetSeqApp=

# pathToOutputFiles: provide the path to the requested output directory
# IMPORTANT: make sure you have write permission
# example: pathToOutputFiles=/outputDirectory 
pathToOutputFiles=

# files: provide full path + name of the fastq file(s)
# IMPORTANT: make sure you have read permission
# example: files=/pathToInputDirectory/samp1e.fq 
files=

# compression: provide compression method of the input file
# IMPORTANT REMARK: choose from bz2, gz, none
# example: compression=none
compression=

# reference: provide reference genome for the mapping
# example: reference=GRCh38
reference=