From 9910e8ee2d3572d9745b12b1ea8c8b10ad3df91f Mon Sep 17 00:00:00 2001 From: gajos Date: Fri, 17 Nov 2017 15:56:50 +0100 Subject: [PATCH] Update parameter_dependencies.in --- parameter_dependencies.in | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/parameter_dependencies.in b/parameter_dependencies.in index 5ef819b..5fdf04a 100644 --- a/parameter_dependencies.in +++ b/parameter_dependencies.in @@ -1,9 +1,9 @@ # starIndex: provide the full path to the STAR index directory # NetSeqPipeline will: # 1) create a large index files for the selected reference genome -# 2) if index has been previously created: make sure it is available in the given starIndex location -# in a subdirectory with name of the reference -# example: for a reference genome e.g. GRCh38, make sure the file is located in /pathToStarIndex/GRCh38/ +# 2) if index has been previously created: make sure it is available in the given starIndex location +# in a subdirectory with name of the reference +# example: for a reference genome e.g. GRCh38, make sure the file is located in /pathToStarIndex/GRCh38/ # IMPORTANT: make sure you have write permission # example: starIndex=/pathToStarIndex starIndex=