Makefile

# * Max Planck Institute of Psychiatry, Munich
# * author: Stefan Kleeberger
# * date: 2015

CC=/usr/local/cuda/bin/nvcc -I$(cudaLib) -arch sm_35 $(MPFLAG)
cudaLib=/usr/local/cuda/include
OPT=
MPFLAG=
CFLAGS= -c -D_REENTRANT

all -$(OPT): kleEpistasis

clean:
	rm -rf build/
	rm -rf bin/
	mkdir bin
	mkdir build

binomialOptions.o: src/extern/binomialOptions_gold.cpp
	$(CC) $(CFLAGS) -o build/binomialOptions.o src/extern/binomialOptions_gold.cpp

fileWriter.o: src/FileWriter.cpp
	$(CC) $(CFLAGS) -o build/fileWriter.o src/FileWriter.cpp

gpuNaivGrid.o: src/srcCuda/GpuNaivGrid.cu
	$(CC) $(CFLAGS) -o build/gpuNaivGrid.o src/srcCuda/GpuNaivGrid.cu

gpuNaiv.o: src/srcCuda/GpuNaiv.cu
	$(CC) $(CFLAGS) -o build/gpuNaiv.o src/srcCuda/GpuNaiv.cu

gpuTest.o: src/srcCuda/GpuTest.cu
	$(CC) $(CFLAGS) -o build/gpuTest.o src/srcCuda/GpuTest.cu

gpuProps.o: src/srcCuda/GpuProps.cu
	$(CC) $(CFLAGS) -o build/gpuProps.o src/srcCuda/GpuProps.cu

fisherYatesShuffle.o: src/FisherYatesShuffle.cpp
	$(CC) $(CFLAGS) -o build/fisherYatesShuffle.o src/FisherYatesShuffle.cpp

indicesShuffler.o: src/IndicesShuffler.cpp
	$(CC) $(CFLAGS) -o build/indicesShuffler.o src/IndicesShuffler.cpp

phenoCoding.o: src/PhenoCoding.cpp
	$(CC) $(CFLAGS) -o build/phenoCoding.o src/PhenoCoding.cpp

zMNSnpCoding.o: src/ZMNSnpCoding.cpp
	$(CC) $(CFLAGS) -o build/zMNSnpCoding.o src/ZMNSnpCoding.cpp

baseSnpCoding.o: src/BaseSnpCoding.cpp
	$(CC) $(CFLAGS) -o build/baseSnpCoding.o src/BaseSnpCoding.cpp

plinkPhenoReader.o: src/PlinkPhenoReader.cpp
	$(CC) $(CFLAGS) -o build/plinkPhenoReader.o src/PlinkPhenoReader.cpp

plinkBinReader.o: src/PlinkBinReader.cpp
	$(CC) $(CFLAGS) -o build/plinkBinReader.o src/PlinkBinReader.cpp

plinkReader.o: src/PlinkReader.cpp
	$(CC) $(CFLAGS) -o build/plinkReader.o src/PlinkReader.cpp

fileReader.o: src/FileReader.cpp
	$(CC) $(CFLAGS) -o build/fileReader.o src/FileReader.cpp

resultSaver.o: src/ResultSaver.cpp
	$(CC) $(CFLAGS) -o build/resultSaver.o src/ResultSaver.cpp

environment.o: src/Environment.cpp
	$(CC) $(CFLAGS) -o build/environment.o src/Environment.cpp

injector.o: src/Injector.cpp
	$(CC) $(CFLAGS) -o build/injector.o src/Injector.cpp

flagParser.o: src/FlagParser.cpp
	$(CC) $(CFLAGS) -o build/flagParser.o src/FlagParser.cpp

main.o: src/main.cpp
	$(CC) $(CFLAGS) -o build/main.o src/main.cpp

kleEpistasis: main.o flagParser.o injector.o environment.o resultSaver.o fileReader.o plinkReader.o plinkBinReader.o baseSnpCoding.o zMNSnpCoding.o plinkPhenoReader.o phenoCoding.o \
		gpuProps.o indicesShuffler.o fisherYatesShuffle.o gpuTest.o gpuNaiv.o gpuNaivGrid.o fileWriter.o binomialOptions.o
	$(CC) $(OPT) -o bin/kleEpistasis build/main.o build/flagParser.o build/injector.o build/environment.o build/resultSaver.o build/fileReader.o \
			build/plinkReader.o build/plinkBinReader.o build/plinkPhenoReader.o build/baseSnpCoding.o build/zMNSnpCoding.o build/phenoCoding.o \
			build/gpuProps.o build/indicesShuffler.o build/fisherYatesShuffle.o build/gpuTest.o build/gpuNaiv.o build/gpuNaivGrid.o \
			build/fileWriter.o build/binomialOptions.o