From 514f9f48851c34e29d847a3e0db014bb1b5fba5e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Benno=20Pu=CC=88tz?= Date: Wed, 23 Mar 2016 02:43:41 +0100 Subject: [PATCH] fixed links to PLINK doc --- README.md | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index ae81c08..ec79fc6 100644 --- a/README.md +++ b/README.md @@ -40,11 +40,11 @@ Please customize your Makefile as you need. You may want to change ## What should my data look like? In order to perform brute-force statistical 3-way interaction tests on SNP data with kleEpistasis you will have to provide your genotype data in PLINK binary format and a phenotype in PLINK alternate phenotype format. Please see -- [PLINK bed file documentation]("http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml#bed") +- [PLINK bed file documentation](http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml#bed) and -- [PLINK phenotype file documentation]("http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml#pheno") +- [PLINK phenotype file documentation](http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml#pheno) for more information regarding file formats. @@ -54,7 +54,7 @@ for more information regarding file formats. `-path [path]` Absolute or relative path to plink files in binary format (.bed .bim .fam) *without* file extension -`-pathPheno [path]` Absolute or relative path to plink alternate phenotype file *with* file extension\ +`-pathPheno [path]` Absolute or relative path to plink alternate phenotype file *with* file extension `-outPath [path]` Absolute or relative path to file where results will be written *with* file extension (.csv) @@ -95,8 +95,8 @@ This program will altogether create n+2 threads with n as the number passed via #### Memory: Doing a run on 5k SNPs and 1k Individuals, you need at least 20GB of RAM -####Execution time: -We were able to perform a run on 5k SNPs and 1k Individuals, on an Intel(R) Xeon(R) CPU E5-2630 v3 @ 2.40GHz combined with a NVIDIA Tesla K40 in approx. "2 hours" +#### Execution time: +We were able to perform a run on 5k SNPs and 1k Individuals, on an Intel(R) Xeon(R) CPU E5-2630 v3 @ 2.40GHz combined with a NVIDIA Tesla K40 in approx. 2 hours ### Result file: