{% extends 'base.html' %} {% block title %} {% if sequence %} {{ sequence.name }} details {% else %} Sequence not found {% endif %} {% endblock %} {% block container %} {% import "macros/cluster_actions.html" as ca %} {% import "macros/neighborhood_actions.html" as na %}
Aliases : {{sequence.aliases}}
{%endif%} {% if sequence.description %}Description : {{sequence.description}}
{% else %}No description available
{% endif %}Gene families : {%- if families|count > 0 -%}{%- for family in families -%}
{{ family.name }} ({{ family.method.method }}) Phylogenetic Tree(s):
{% for tree in family.trees %}
{{tree.label}}
{%- if not loop.last -%}, {% endif %}
{% else %}
No tree available for this family
{% endfor %}
{%- if not loop.last -%},
{% endif %}
{% endfor %} {% else %}No families found for this sequence{% endif %}
Sequence : coding (download) {%- if sequence.type == 'protein_coding' -%}, protein (download) {% endif %}
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
{% endif %} {% endfor %} {% if expression_profiles|count > 1 %}No expression profile available
{% endif %}Type | Description | Actions | |
---|---|---|---|
Neighborhood | {{ network.method.description }}: {{ network.probe }} | {% if network.neighbors_count > 0 %}{{ na.neighborhood_actions(network.id) }} | {% else %}No neighbors in network | {% endif %}
Cluster | {{ cluster.method.method }}: {{ cluster.name }} | {{ ca.cluster_actions(cluster.id) }} |
No co-expressed genes found
{% endif %}Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
{{ ecc_query_association.target_sequence.name }} | {% if ecc_query_association.target_sequence.aliases %}{{ ecc_query_association.target_sequence.aliases|truncate(20) }}{% else %}No alias{% endif %} | {% if ecc_query_association.target_sequence.description %}{{ ecc_query_association.target_sequence.description|truncate(60) }}{% else %}No description available{% endif %} | {{ ecc_query_association.ecc|round(2) }} | {{ ecc_query_association.gene_family_method.method }} |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
{{ go_association.go.short_type }} | {{ go_association.go.label }} | {{ go_association.go.name }} | {{ go_association.evidence }} | {{ go_association.source }} |
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
{{ go_association.go.short_type }} | {{ go_association.go.label }} | {{ go_association.go.name }} | {{ go_association.evidence }} | {{ go_association.source }} |
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop | ||
---|---|---|---|---|---|
{{ association.domain.label }} | {{ association.domain.description }} | {% if association.start %}{{ association.start }} | {% else %}- | {% endif %} {% if association.stop %}{{ association.stop }} | {% else %}- | {% endif %}
No InterPro domains available for this sequence
{{ xref.platform }} | {% if xref.url %} {{ xref.name }} {% else %} {{ xref.name }} {% endif %} |
No external refs found! |