{% extends 'admin/my_base.html' %} {% block body %} {% if form %}

Add Expression Profile

{{ form.csrf_token }}
{{ form.species_id.label }} {{ form.species_id(class_="form-control") }}
{{ form.source.label }} {{ form.source(class_="form-control") }}

Normalized expression matrix generated using LSTrAP, sequence names should match the names in the database

Text file with two tab-delimited columns with one line header. The first is the sample name, the second a condition. Samples with the same condition will be merged.

Tab delimited file with the various conditions in order of desired appearance in the plots, here also colors can be assigned to each condition in rgba(10,10,10,0.5) format

Help
An RPKM or TPM normalized matrix from LSTrAP can be directly used. Furthermore you should include sample annotation.

Example for sample annotatation (note the header), two columns are required. The first is the sample ID, as it occurs in the matrix (omit the suffix '.htseq'), the second column indicates the condition sampled.

SampleID     ConditionDescription
SRR068956    Endosperm
SRR068957    Endosperm
SRR068958    Endosperm
SRR068959    Endosperm
SRR068971    Endosperm
SRR068975    Endosperm
SRR068976    Endosperm
SRR068977    Endosperm
SRR068987    Endosperm
...
Furthermore a file to color code tissues can be provided. Here for each condition a color (that will be used in profile plots needs to be specified. Note that the order in this fill will be the order in profile plots! Colors need to be in rgba(0-255,0-255,0-255,0-1) format.

Roots (apex), 7 DAG    rgba(153, 51, 0, 0.5)
Roots (differentation zone), 4 DAP    rgba(153, 51, 0, 0.5)
...
{% endif %} {% endblock %} {% block tail %} {{ super() }} {% endblock%}