{% extends 'base.html' %} {% block title %} {% if form %} Compare specificity {% else %} {{ labels.left_species }} {{ labels.left_condition }} vs {{ labels.right_species }} {{ labels.right_condition }} {% endif %} {% endblock %} {% block container %}

Compare Specificity

Find out which genes are expressed specifically in species and/or conditions and have homologs expressed in a different species and/or condition.

{% if form %}
Options
{{ form.csrf_token }}
{{form.family_method(class_="form-control")}}


{{form.speciesa(class_="form-control")}}
{{form.methodsa(class_="form-control", disabled=True)}}
{{form.conditionsa(class_="form-control", disabled=True)}}
{{form.cutoffa(class_="form-control", **{'data-provide':"slider", 'data-slider-id':"cutoffSlider", 'data-slider-min':"0.5", 'data-slider-max':"1", 'data-slider-step': "0.01", 'data-slider-value': "0.85"})}}
Genes found: 0
{{form.speciesb(class_="form-control")}}
{{form.methodsb(class_="form-control", disabled=True)}}
{{form.conditionsb(class_="form-control", disabled=True)}}
{{form.cutoffb(class_="form-control", **{'data-provide':"slider", 'data-slider-id':"cutoffSlider", 'data-slider-min':"0.5", 'data-slider-max':"1", 'data-slider-step': "0.01", 'data-slider-value': "0.85"})}}
Genes found: 0


Help
  • First select which gene families to use for the comparison.
  • Select the species and conditions to compare. (Note that different methods might have different conditions associated with them)
  • Set the desired SPM cutoff (recommended: 0.85)
  • On each side Genes found indicates how many genes will appear in the results for that selection. Adjust the settings accordingly.
  • Finally, click Compare specificity
{% else %}

{{ labels.left_species }} {{ labels.left_condition }} vs {{ labels.right_species }} {{ labels.right_condition }}

{% if use_interpro%} {% else%} {% endif %} {% for current_type in ['intersection', 'left', 'right'] %} {% for feat_id, td in table_data.items() if td.type == current_type %} {% if use_interpro%} {% else%} {% endif %} {% else %} {% endfor %} {% endfor %}
InterPro domainGene Family{{ labels.left_species }} {{ labels.left_condition }} {{ labels.right_species }} {{ labels.right_condition }} Type
{{td.name}}{{td.name}} {% for l in td.left_genes %} {{l.name}}{%- if l.low_abundance %} {%- endif -%}{%- if l.shortest_alias %} ({{ l.shortest_alias }}){%- endif -%}{%- if not loop.last -%}, {%- endif -%} {% else %} - {% endfor %} {% for r in td.right_genes %} {{r.name}}{%- if r.low_abundance %} {%- endif -%}{%- if r.shortest_alias %} ({{ r.shortest_alias }}){%- endif -%}{%- if not loop.last -%}, {%- endif -%} {% else %} - {% endfor %} {{ td.type }}
No genes found matching those criteria
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{% endif %}
{% endblock %} {% block extrajs %} {% if form %} {% else %} {% endif %} {% endblock %}