{% extends 'base.html' %} {% block title %} {% if order %} {% if cluster %} {{cluster.name}} heatmap {% else %} Custom Heatmap {% endif %} {% else %} Create Custom Heatmap {% endif %} {% endblock %} {% block container %}
View as: {{ ca.cluster_actions(cluster.id, exclude=["heatmap"]) }} {% if zlog == 1 %} (view raw or row-normalized) {% elif raw == 1 %} (view zlog-transformed or row-normalized) {% else %} (view raw or zlog-transformed) {% endif %}
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
{% elif raw == 1 %} {% if tree %}(Showing raw values, normalize by row)
{% elif family %}(Showing raw values, normalize by row)
{% else %}(Showing raw values)
{% endif%} {% else %} {% if tree %}(Values are normalized against highest expression of the row, show raw values)
{% elif family %}(Values are normalized against highest expression of the row, show raw values)
{% else %}(Values are normalized against highest expression of the row)
{% endif %} {% endif %}Gene | {% for o in order %}{{ o }} |
{% endfor %}
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{{ p.name }}{%- if p.shortest_alias %} ({{ p.shortest_alias }}){%- endif -%} |
{% else %}
{{ p.name }} |
{% endif %}
{% for o in order %}
{% if p['values'][o] != '-' %}{{ p['values'][o]|round(2) }}{% else %}-{% endif %} | {% endfor %}
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.
{% elif raw == 1 %}Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)
{% else %}Expression values normalized per gene (using the maximum value, Green cells indicate low expression and red high. (Dark gray cells indicate missing values)
{% endif %}Creates an expression heatmap (table with shaded cells) for a selected set of genes.