{% extends 'admin/my_base.html' %} {% block body %}

Add Expression Specificity

{% if condition_form %}

Condition Specificity

Takes all conditions sampled into account.

{{ condition_form.csrf_token }}
{{ condition_form.species_id.label }} {{ condition_form.species_id(class_="form-control") }}
{{ condition_form.description.label }} {{ condition_form.description(class_="form-control") }}
Help
Calculates SPM, Tau and entropy for all conditions.
{% endif %} {% if tissue_form %}

Tissue Specificity

Takes all conditions sampled into account.

{{ tissue_form.csrf_token }}
{{ tissue_form.species_id.label }} {{ tissue_form.species_id(class_="form-control") }}
{{ tissue_form.description.label }} {{ tissue_form.description(class_="form-control") }}

Add a file to convert conditions to tissues.

Help
Creates a profile where multiple conditions are collapsed into one. Then calculates the SPM, Tau and entropy for this profile. One file is required, describing which conditions should be grouped, and which color that bar should have in profile plot. Example input, a tab-delimited file with three columns. First the condition, then the more general group (e.g. tissue, organ, ...) then the color to use.

Roots (apex), 7 DAG    Roots    rgba(153, 51, 0, 0.5)
Roots (differentation zone), 4 DAP    Roots    rgba(153, 51, 0, 0.5)
Roots (elongation zone), 4 DAP    Roots    rgba(153, 51, 0, 0.5)
Roots (meristematic zone), 4 DAP    Roots    rgba(153, 51, 0, 0.5)
Roots (QC cells), 6 DAS    Roots    rgba(153, 51, 0, 0.5)
...
{% endif %} {% endblock %} {% block tail %} {{ super() }} {% endblock%}