{% extends 'base.html' %} {% block title %} {% if results%} Enriched Clusters {% else %} Search Enriched Clusters {% endif %} {% endblock %} {% block container %} {% import 'macros/cluster_actions.html' as ca %}
{% if results%}

Search results

{% if g.debug %}{% endif %} {% for r in results %} {% for c in r.clusters %} {% if g.debug %}{% endif %} {% endfor %}

{% endfor %}
IDSpecies Method Name Enrichment (log2) % (in cluster) p-Value Corrected p-value Action
{{ c.cluster_id }}{{ c.cluster.method.network_method.species.name }} {{ c.cluster.method.method }} {{ c.cluster.name }} {{ c.enrichment|round(2) }} {{ (c.cluster_count*100/c.cluster_size)|round(2) }}% ({{c.cluster_count}}/{{c.cluster_size}}) {{ c.p_value|round(5) }} {{ c.corrected_p_value|round(5) }} {{ ca.cluster_actions(c.cluster_id) }}
Download table

{% elif form %}

Enriched Clusters

Co-expression clusters enriched for certain GeneOntology terms can be found using the form below.

Search options
{{ form.csrf_token }} {{form.go_term(class_="form-control typeahead update_count") }}
{{form.method(class_="form-control update_count") }}

{{form.min_enrichment(class_="form-control update_count") }}

{{form.max_p(class_="form-control update_count") }}

{{form.max_corrected_p(class_="form-control update_count") }}


{{form.clade(class_="form-control update_count") }}

{% if example and example.go_term %} {% endif %}
Help
  • Enter the GO term that needs to be enriched in a cluster
  • Select the clusters to search
  • Set the parameters. Checkboxes enable/disable certain filters. (Recommended: enable corrected p-value and keep this below 0.05)
  • Click Find clusters

  • To limit results to clusters which are enriched for genes from a certain clade/phylostrata, check the box Enable Clade/Phylostrata enrichment and select the desired clade from the list.

  • Using the Count button you can check how many clusters meet the current criteria.
{% endif %}
{% endblock %} {% block extrajs %} {% if form %} {% endif %} {% endblock %}