{% extends 'base.html' %} {% block title %} {% if sequence %} {{ sequence.name }} details {% else %} Sequence not found {% endif %} {% endblock %} {% block container %} {% import "macros/cluster_actions.html" as ca %} {% import "macros/neighborhood_actions.html" as na %}
{% if sequence %}

{{ sequence.name }}{%- if sequence.aliases -%} ({{ sequence.aliases|truncate(25) }}){%endif%}


{%- if sequence.aliases -%}

Aliases : {{sequence.aliases}}

{%endif%} {% if sequence.description %}

Description : {{sequence.description}}

{% else %}

No description available

{% endif %}

Gene families : {%- if families|count > 0 -%}{%- for family in families -%} {{ family.name }} ({{ family.method.method }}) Phylogenetic Tree(s): {% for tree in family.trees %} {{tree.label}} {%- if not loop.last -%}, {% endif %} {% else %} No tree available for this family {% endfor %} {%- if not loop.last -%},
{% endif %} {% endfor %} {% else %}No families found for this sequence{% endif %}

Sequence : coding (download) {%- if sequence.type == 'protein_coding' -%}, protein (download) {% endif %}

{% if expression_profiles|count > 0 %} {% for profile in expression_profiles %} {% if loop.first %} {% if profile.low_abundance %}
Attention: This gene has low abundance.

{% endif %}

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

{% endif %} {% endfor %} {% if expression_profiles|count > 1 %}
{% endif %} {% else %}

No expression profile available

{% endif %}
{% if network_nodes|count > 0 or coexpression_clusters|count > 0 %}
{% for network in network_nodes %} {% if network.neighbors_count > 0 %} {% else %} {% endif %} {% endfor %} {% for cluster in coexpression_clusters %} {% endfor %}
Type Description Actions
Neighborhood {{ network.method.description }}: {{ network.probe }}{{ na.neighborhood_actions(network.id) }}No neighbors in network
Cluster {{ cluster.method.method }}: {{ cluster.name }} {{ ca.cluster_actions(cluster.id) }}
{% else %}

No co-expressed genes found

{% endif %}

{% if ecc_query_associations|count > 0 %}
{% for ecc_query_association in ecc_query_associations %} {% endfor %}
Target Alias Description ECC score Gene Family Method Actions
{{ ecc_query_association.target_sequence.name }} {% if ecc_query_association.target_sequence.aliases %}{{ ecc_query_association.target_sequence.aliases|truncate(20) }}{% else %}No alias{% endif %} {% if ecc_query_association.target_sequence.description %}{{ ecc_query_association.target_sequence.description|truncate(60) }}{% else %}No description available{% endif %} {{ ecc_query_association.ecc|round(2) }} {{ ecc_query_association.gene_family_method.method }}
{% endif %}
{% for go_association in go_associations if not go_association.predicted %} {% if go_association.evidence == None %} {% else %} {% endif %} {% else %} {% endfor %}
Type GO Term Name Evidence Source
{{ go_association.go.short_type }} {{ go_association.go.label }} {{ go_association.go.name }} {{ go_association.evidence }} {{ go_association.source }}

No GO annotation available for this sequence

{% for go_association in go_associations if go_association.predicted %} {% if go_association.evidence == None %} {% else %} {% endif %} {% else %} {% endfor %}
Type GO Term Name Evidence Source
{{ go_association.go.short_type }} {{ go_association.go.label }} {{ go_association.go.name }} {{ go_association.evidence }} {{ go_association.source }}

No Predicted GO terms available for this sequence

{% if interpro_associations|count > 0 %}
{% for association in interpro_associations %} {% if association.start %} {% else %} {% endif %} {% if association.stop %} {% else %} {% endif %} {% endfor %}
InterPro domains Description Start Stop
{{ association.domain.label }} {{ association.domain.description }}{{ association.start }} - {{ association.stop }} -
{% else %}

No InterPro domains available for this sequence

{% endif %}
{% for xref in sequence.xrefs if xref.platform != 'token' and xref.platform != 'display' %} {% else %} {% endfor %}
{{ xref.platform }} {% if xref.url %} {{ xref.name }} {% else %} {{ xref.name }} {% endif %}
No external refs found!
{% endif %}
{% endblock %} {% block extrajs %} {% endblock %}