From eb6210145c59c1a092393b6079eb5015d4b995a7 Mon Sep 17 00:00:00 2001 From: anastasiia Date: Tue, 4 Dec 2018 11:05:30 +0100 Subject: [PATCH] backup before changing to multiprocessing and visualisation of two groups instead of each gene --- visualize.py | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/visualize.py b/visualize.py index 1150b39..ab28a68 100644 --- a/visualize.py +++ b/visualize.py @@ -13,12 +13,9 @@ import multiprocessing import logging import subprocess -from Bio import SeqIO -import Bio.SeqIO.FastaIO as bio import numpy as np from collections import defaultdict from scipy import stats -import pyBigWig from statsmodels.sandbox.stats.multicomp import multipletests #for bonfferoni import matplotlib.pyplot as plt import random @@ -109,7 +106,7 @@ def make_box_plot(genes_of_interest, output_directory, figure_name, color_name): ax.set_title('The visualization of correlation between gene and exons length') ax.set_xlabel('Genes') - ax.set_ylabel('Scores') + ax.set_ylabel('Percentage of exons len') ax.set_xticklabels(groups_names, rotation=45, fontsize=8)