diff --git a/README.md b/README.md index a61a5a7..0ada9ab 100644 --- a/README.md +++ b/README.md @@ -46,10 +46,12 @@ Explanation on how to run NetCore is avilable in the [tutorial notebook](https:/ Example data for running NetCore is in the data subdirectory. ### Protein Protein Interaction network -The CPDB PPI high confidence network [todo add ref] is provided as an edge list. +The CPDB PPI high confidence network [1] is provided as an edge list. The CPDB PPI network can be downloaded via [ConsensusPathDB](http://cpdb.molgen.mpg.de/) ### Type II diabetes GWAS data for Type II diabetes is provided from: * [The GWAS Catalog](https://www.ebi.ac.uk/gwas/efotraits/EFO_0001360) - all the gene associations were downloaded and the p-values were converted to weights using -log10. * [GWAS list](https://github.com/idekerlab/Network_Evaluation_Tools/blob/master/Data/GWAS_Catalog_genesets.txt) - the genes in this list as known to be associated with Type II Diabetes and can be used as seed genes for NetCore's module identification. + +1 [Barel, G., & Herwig, R. (2018). Network and Pathway Analysis of Toxicogenomics Data. Frontiers in genetics, 9, 484.](https://doi.org/10.3389/fgene.2018.00484) \ No newline at end of file