From c3cbe09d399b813ba4d00cb1198b58f5dcc9835a Mon Sep 17 00:00:00 2001 From: Gal Barel Date: Tue, 9 Mar 2021 14:13:39 +0100 Subject: [PATCH] changed pval threshold range --- evaluation/eval_cross_validation.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/evaluation/eval_cross_validation.py b/evaluation/eval_cross_validation.py index 93c6218..26807c3 100644 --- a/evaluation/eval_cross_validation.py +++ b/evaluation/eval_cross_validation.py @@ -21,7 +21,7 @@ def get_parser(): parser.add_argument('-e', '--edge_list', type=str, required=True, help='Edge list of the input network') parser.add_argument('-s', '--seed_list', type=str, required=True, help="List of seed nodes for starting the propagation from") parser.add_argument('-m', '--methods', type=str, nargs='+', required=False, default=["deg_norm","core_norm","deg_core_diff","deg_core_ratio"], help='Types of normalisation methods to be evaluated and compared') - parser.add_argument('-p', '--pval_thresh', type=list, required=False, default=np.linspace(0.01,1.0,100), help='Pvalues thresholds for the evaluation') + parser.add_argument('-p', '--pval_thresh', type=list, required=False, default=np.linspace(0.001,1.01,110), help='Pvalues thresholds for the evaluation') parser.add_argument('-f', '--fold_num', type=int, required=True, help='Number of cross validation folds') parser.add_argument('-d', '--cross_valid_dir', type=str, required=True, help='permutations directory that includes the edge lists for all network permutations') return parser