diary_tree

%%%%% To be clarified with annotation task %%%%%%
%%%%% What? %%%%%
%%%%% In TREE, basic cell groups category has only one value in id as opposed to several. Why? %%%
load TREE
[table idxLUT] = builtable(tree);
{Undefined function or variable 'builtable'.
} 
[table idxLUT] = buildtable(tree);
%%%%% TREE is the whole brain structure.
%%%% Examining TREE %%%%%
tree

tree = 

  <a href="matlab:helpPopup struct" style="font-weight:bold">struct</a> with fields:

                     id: 997
               atlas_id: -1
            ontology_id: 1
                acronym: 'root'
                   name: 'root'
      color_hex_triplet: 'FFFFFF'
            graph_order: 0
               st_level: []
          hemisphere_id: 3
    parent_structure_id: []
               children: {[1×1 struct]  [1×1 struct]  [1×1 struct]  [1×1 struct]}

[table idxLUT] = buildtable(tree);
tree.children{1,1}

ans = 

  <a href="matlab:helpPopup struct" style="font-weight:bold">struct</a> with fields:

                     id: 8
               atlas_id: 0
            ontology_id: 1
                acronym: 'grey'
                   name: 'Basic cell groups and regions'
      color_hex_triplet: 'BFDAE3'
            graph_order: 1
               st_level: []
          hemisphere_id: 3
    parent_structure_id: 997
               children: {[1×1 struct]  [1×1 struct]  [1×1 struct]}

tree.children{1,1}.children{1,1}

ans = 

  <a href="matlab:helpPopup struct" style="font-weight:bold">struct</a> with fields:

                     id: 567
               atlas_id: 70
            ontology_id: 1
                acronym: 'CH'
                   name: 'Cerebrum'
      color_hex_triplet: 'B0F0FF'
            graph_order: 2
               st_level: []
          hemisphere_id: 3
    parent_structure_id: 8
               children: {[1×1 struct]  [1×1 struct]}

tree.children{1,1}.children{1,1}.children{1,1}

ans = 

  <a href="matlab:helpPopup struct" style="font-weight:bold">struct</a> with fields:

                     id: 688
               atlas_id: 85
            ontology_id: 1
                acronym: 'CTX'
                   name: 'Cerebral cortex'
      color_hex_triplet: 'B0FFB8'
            graph_order: 3
               st_level: []
          hemisphere_id: 3
    parent_structure_id: 567
               children: {[1×1 struct]  [1×1 struct]}

tree.children{1,1}.children{1,1}.children{1,2}

ans = 

  <a href="matlab:helpPopup struct" style="font-weight:bold">struct</a> with fields:

                     id: 623
               atlas_id: 77
            ontology_id: 1
                acronym: 'CNU'
                   name: 'Cerebral nuclei'
      color_hex_triplet: '98D6F9'
            graph_order: 492
               st_level: []
          hemisphere_id: 3
    parent_structure_id: 567
               children: {[1×1 struct]  [1×1 struct]}

tree.children{1,1}.children{1,1}.children{1,1}.children{1,1}

ans = 

  <a href="matlab:helpPopup struct" style="font-weight:bold">struct</a> with fields:

                     id: 695
               atlas_id: 86
            ontology_id: 1
                acronym: 'CTXpl'
                   name: 'Cortical plate'
      color_hex_triplet: '70FF70'
            graph_order: 4
               st_level: []
          hemisphere_id: 3
    parent_structure_id: 688
               children: {[1×1 struct]  [1×1 struct]  [1×1 struct]}

tree.children{1,1}.children{1,1}.children{1,1}.children{1,2}

ans = 

  <a href="matlab:helpPopup struct" style="font-weight:bold">struct</a> with fields:

                     id: 703
               atlas_id: 87
            ontology_id: 1
                acronym: 'CTXsp'
                   name: 'Cortical subplate'
      color_hex_triplet: '8ADA87'
            graph_order: 477
               st_level: []
          hemisphere_id: 3
    parent_structure_id: 688
               children: {[1×1 struct]  [1×1 struct]  [1×1 struct]  [1×1 struct]  [1×1 struct]  [1×1 struct]  [1×1 struct]}

tree.children{1,1}.children{1,1}.children{1,2}.children{1,2}

ans = 

  <a href="matlab:helpPopup struct" style="font-weight:bold">struct</a> with fields:

                     id: 803
               atlas_id: 241
            ontology_id: 1
                acronym: 'PAL'
                   name: 'Pallidum'
      color_hex_triplet: '8599CC'
            graph_order: 529
               st_level: []
          hemisphere_id: 3
    parent_structure_id: 623
               children: {[1×1 struct]  [1×1 struct]  [1×1 struct]  [1×1 struct]}

tree.children{1,1}.children{1,1}.children{1,2}.children{1,1}

ans = 

  <a href="matlab:helpPopup struct" style="font-weight:bold">struct</a> with fields:

                     id: 477
               atlas_id: 342
            ontology_id: 1
                acronym: 'STR'
                   name: 'Striatum'
      color_hex_triplet: '98D6F9'
            graph_order: 493
               st_level: []
          hemisphere_id: 3
    parent_structure_id: 623
               children: {[1×1 struct]  [1×1 struct]  [1×1 struct]  [1×1 struct]}

%%%% When we give Cerebrum as the region of interest, as output we get the ids of Cerebrum, the Cortexs and its children's ids, the Cerebral Nuclei and its children's ids %%%%%%%
diary off