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Atlas_Norm_Dartel/dartel_with_existing_templates_job.m
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| %----------------------------------------------------------------------- | |
| % Job saved on 05-Mar-2019 16:35:21 by cfg_util (rev $Rev: 7345 $) | |
| % spm SPM - SPM12 (7487) | |
| % cfg_basicio BasicIO - Unknown | |
| %----------------------------------------------------------------------- | |
| %% | |
| matlabbatch{1}.spm.tools.dartel.warp1.images = { | |
| { | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0001x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0003x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0005x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0007x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0009x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0011x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0013x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0015x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0017x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0023x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0025x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0029x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0031x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0033x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0035x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0037x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0039x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0041x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc1bet_sub-0043x10__T1w.nii,1' | |
| } | |
| { | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0001x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0003x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0005x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0007x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0009x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0011x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0013x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0015x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0017x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0023x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0025x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0029x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0031x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0033x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0035x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0037x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0039x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0041x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc2bet_sub-0043x10__T1w.nii,1' | |
| } | |
| { | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0001x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0003x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0005x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0007x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0009x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0011x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0013x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0015x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0017x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0023x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0025x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0029x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0031x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0033x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0035x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0037x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0039x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0041x10__T1w.nii,1' | |
| '/home/tchaudhuri/data/Atlas_Norm_Dartel/rc3bet_sub-0043x10__T1w.nii,1' | |
| } | |
| }'; | |
| %% | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.rform = 0; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(1).its = 3; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(1).rparam = [4 2 1e-06]; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(1).K = 0; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(1).template = {'/home/tchaudhuri/data/Atlas_Norm_Dartel/Template_1.nii'}; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(2).its = 3; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(2).rparam = [2 1 1e-06]; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(2).K = 0; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(2).template = {'/home/tchaudhuri/data/Atlas_Norm_Dartel/Template_2.nii'}; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(3).its = 3; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(3).rparam = [1 0.5 1e-06]; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(3).K = 1; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(3).template = {'/home/tchaudhuri/data/Atlas_Norm_Dartel/Template_3.nii'}; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(4).its = 3; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(4).rparam = [0.5 0.25 1e-06]; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(4).K = 2; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(4).template = {'/home/tchaudhuri/data/Atlas_Norm_Dartel/Template_4.nii'}; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(5).its = 3; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(5).rparam = [0.25 0.125 1e-06]; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(5).K = 4; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(5).template = {'/home/tchaudhuri/data/Atlas_Norm_Dartel/Template_5.nii'}; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(6).its = 3; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(6).rparam = [0.25 0.125 1e-06]; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(6).K = 6; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.param(6).template = {'/home/tchaudhuri/data/Atlas_Norm_Dartel/Template_6.nii'}; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.optim.lmreg = 0.01; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.optim.cyc = 3; | |
| matlabbatch{1}.spm.tools.dartel.warp1.settings.optim.its = 3; |