diff --git a/Adapting_new_script_for_computing_cluster.sh b/Adapting_new_script_for_computing_cluster.sh index fbac5fa..4cc46db 100755 --- a/Adapting_new_script_for_computing_cluster.sh +++ b/Adapting_new_script_for_computing_cluster.sh @@ -49,7 +49,7 @@ submit() { echo "no _2.fastq file for $f1" continue fi - "${MXQSUB[@]}" --stdout "$log_dir/$id.out" "$0" --execute "$id" "$f1" "$f2" + "${MXQSUB[@]}" --stdout "$log_dir/$id.log" "$0" --execute "$id" "$f1" "$f2" done # input files "blabla_R1_001.fastq" , ""blabla_R2_001.fastq" @@ -66,7 +66,7 @@ submit() { echo "no _R2_001.fastq file for $f1" continue fi - "${MXQSUB[@]}" --stdout "$log_dir/$id.out" "$0" --execute "$id" "$f1" "$f2" + "${MXQSUB[@]}" --stdout "$log_dir/$id.log" "$0" --execute "$id" "$f1" "$f2" done }