diff --git a/Adapting_new_script_for_computing_cluster.sh b/Adapting_new_script_for_computing_cluster.sh
index 4cc46db..3f090c3 100755
--- a/Adapting_new_script_for_computing_cluster.sh
+++ b/Adapting_new_script_for_computing_cluster.sh
@@ -97,7 +97,7 @@ execute() {
 
 	: Mapping $id with bowtie2
 
-	bowtie2 --very-sensitive-local --no-mixed -p $THREADS --no-discordant --phred33 -I 10 -X 2000 -x $ebwt -1 ${f1}_val_1.fq -2 ${f2}_val_2.fq \
+	bowtie2 --very-sensitive-local --no-mixed -p $THREADS --no-discordant --phred33 -I 10 -X 2000 -x $ebwt -1 ${f1%%.fastq}_val_1.fq -2 ${f2%%.fastq}_val_2.fq \
 			-S $id.sam >> $id\.mappingStats.txt 2>&1
 
 	: Creating BAM files for $id and filtering for paired and mapped reads