diff --git a/Adapting_new_script_for_computing_cluster.sh b/Adapting_new_script_for_computing_cluster.sh index 36ede2e..fbac5fa 100755 --- a/Adapting_new_script_for_computing_cluster.sh +++ b/Adapting_new_script_for_computing_cluster.sh @@ -93,7 +93,7 @@ execute() { : Trimming $id with trim_galore - prun python3 trim_galore --paired --nextera -j $THREADS fastq/$f1.fastq fastq/$f2.fastq >> $id.trimmingStats.txt 2>&1 + prun python3 trim_galore --paired --nextera -j $THREADS fastq/$f1 fastq/$f2 > $id.trimmingStats.txt 2>&1 : Mapping $id with bowtie2