From 8eb42b3308b712774f223cfb5fda426ed97a0c3d Mon Sep 17 00:00:00 2001 From: Donald Buczek Date: Sun, 11 Sep 2022 13:16:43 +0200 Subject: [PATCH] Fix arguments of trim_galore --- Adapting_new_script_for_computing_cluster.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Adapting_new_script_for_computing_cluster.sh b/Adapting_new_script_for_computing_cluster.sh index 36ede2e..fbac5fa 100755 --- a/Adapting_new_script_for_computing_cluster.sh +++ b/Adapting_new_script_for_computing_cluster.sh @@ -93,7 +93,7 @@ execute() { : Trimming $id with trim_galore - prun python3 trim_galore --paired --nextera -j $THREADS fastq/$f1.fastq fastq/$f2.fastq >> $id.trimmingStats.txt 2>&1 + prun python3 trim_galore --paired --nextera -j $THREADS fastq/$f1 fastq/$f2 > $id.trimmingStats.txt 2>&1 : Mapping $id with bowtie2