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thesis_tm/vg_pb2.py
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| # Generated by the protocol buffer compiler. DO NOT EDIT! | |
| # source: vg.proto | |
| import sys | |
| _b=sys.version_info[0]<3 and (lambda x:x) or (lambda x:x.encode('latin1')) | |
| from google.protobuf.internal import enum_type_wrapper | |
| from google.protobuf import descriptor as _descriptor | |
| from google.protobuf import message as _message | |
| from google.protobuf import reflection as _reflection | |
| from google.protobuf import symbol_database as _symbol_database | |
| from google.protobuf import descriptor_pb2 | |
| # @@protoc_insertion_point(imports) | |
| _sym_db = _symbol_database.Default() | |
| from google.protobuf import struct_pb2 as google_dot_protobuf_dot_struct__pb2 | |
| DESCRIPTOR = _descriptor.FileDescriptor( | |
| name='vg.proto', | |
| package='vg', | |
| syntax='proto3', | |
| serialized_pb=_b('\n\x08vg.proto\x12\x02vg\x1a\x1cgoogle/protobuf/struct.proto\"O\n\x05Graph\x12\x16\n\x04node\x18\x01 \x03(\x0b\x32\x08.vg.Node\x12\x16\n\x04\x65\x64ge\x18\x02 \x03(\x0b\x32\x08.vg.Edge\x12\x16\n\x04path\x18\x03 \x03(\x0b\x32\x08.vg.Path\"2\n\x04Node\x12\x10\n\x08sequence\x18\x01 \x01(\t\x12\x0c\n\x04name\x18\x02 \x01(\t\x12\n\n\x02id\x18\x03 \x01(\x03\"U\n\x04\x45\x64ge\x12\x0c\n\x04\x66rom\x18\x01 \x01(\x03\x12\n\n\x02to\x18\x02 \x01(\x03\x12\x12\n\nfrom_start\x18\x03 \x01(\x08\x12\x0e\n\x06to_end\x18\x04 \x01(\x08\x12\x0f\n\x07overlap\x18\x05 \x01(\x05\"@\n\x04\x45\x64it\x12\x13\n\x0b\x66rom_length\x18\x01 \x01(\x05\x12\x11\n\tto_length\x18\x02 \x01(\x05\x12\x10\n\x08sequence\x18\x03 \x01(\t\"O\n\x07Mapping\x12\x1e\n\x08position\x18\x01 \x01(\x0b\x32\x0c.vg.Position\x12\x16\n\x04\x65\x64it\x18\x02 \x03(\x0b\x32\x08.vg.Edit\x12\x0c\n\x04rank\x18\x05 \x01(\x03\"M\n\x08Position\x12\x0f\n\x07node_id\x18\x01 \x01(\x03\x12\x0e\n\x06offset\x18\x02 \x01(\x03\x12\x12\n\nis_reverse\x18\x04 \x01(\x08\x12\x0c\n\x04name\x18\x05 \x01(\t\"W\n\x04Path\x12\x0c\n\x04name\x18\x01 \x01(\t\x12\x1c\n\x07mapping\x18\x02 \x03(\x0b\x32\x0b.vg.Mapping\x12\x13\n\x0bis_circular\x18\x03 \x01(\x08\x12\x0e\n\x06length\x18\x04 \x01(\x03\"\x93\x07\n\tAlignment\x12\x10\n\x08sequence\x18\x01 \x01(\t\x12\x16\n\x04path\x18\x02 \x01(\x0b\x32\x08.vg.Path\x12\x0c\n\x04name\x18\x03 \x01(\t\x12\x0f\n\x07quality\x18\x04 \x01(\x0c\x12\x17\n\x0fmapping_quality\x18\x05 \x01(\x05\x12\r\n\x05score\x18\x06 \x01(\x05\x12\x16\n\x0equery_position\x18\x07 \x01(\x05\x12\x13\n\x0bsample_name\x18\t \x01(\t\x12\x12\n\nread_group\x18\n \x01(\t\x12$\n\rfragment_prev\x18\x0b \x01(\x0b\x32\r.vg.Alignment\x12$\n\rfragment_next\x18\x0c \x01(\x0b\x32\r.vg.Alignment\x12\x14\n\x0cis_secondary\x18\x0f \x01(\x08\x12\x10\n\x08identity\x18\x10 \x01(\x01\x12\x1a\n\x08\x66ragment\x18\x11 \x03(\x0b\x32\x08.vg.Path\x12\x18\n\x05locus\x18\x12 \x03(\x0b\x32\t.vg.Locus\x12\x1c\n\x06refpos\x18\x13 \x03(\x0b\x32\x0c.vg.Position\x12\x13\n\x0bread_paired\x18\x14 \x01(\x08\x12\x13\n\x0bread_mapped\x18\x15 \x01(\x08\x12\x15\n\rmate_unmapped\x18\x16 \x01(\x08\x12\x1e\n\x16read_on_reverse_strand\x18\x17 \x01(\x08\x12\x1e\n\x16mate_on_reverse_strand\x18\x18 \x01(\x08\x12\x14\n\x0csoft_clipped\x18\x19 \x01(\x08\x12\x1e\n\x16\x64iscordant_insert_size\x18\x1a \x01(\x08\x12\x12\n\nuniqueness\x18\x1b \x01(\x01\x12\x0f\n\x07\x63orrect\x18\x1c \x01(\x01\x12\x17\n\x0fsecondary_score\x18\x1d \x03(\x05\x12\x16\n\x0e\x66ragment_score\x18\x1e \x01(\x01\x12(\n mate_mapped_to_disjoint_subgraph\x18\x1f \x01(\x08\x12$\n\x1c\x66ragment_length_distribution\x18 \x01(\t\x12\x18\n\x10haplotype_scored\x18! \x01(\x08\x12\x19\n\x11haplotype_logprob\x18\" \x01(\x01\x12\x11\n\ttime_used\x18# \x01(\x01\x12 \n\nto_correct\x18$ \x01(\x0b\x32\x0c.vg.Position\x12\x18\n\x10\x63orrectly_mapped\x18% \x01(\x08\x12+\n\nannotation\x18\x64 \x01(\x0b\x32\x17.google.protobuf.Struct\"\xfb\x01\n\x12MultipathAlignment\x12\x10\n\x08sequence\x18\x01 \x01(\t\x12\x0f\n\x07quality\x18\x02 \x01(\x0c\x12\x0c\n\x04name\x18\x03 \x01(\t\x12\x13\n\x0bsample_name\x18\x04 \x01(\t\x12\x12\n\nread_group\x18\x05 \x01(\t\x12\x1c\n\x07subpath\x18\x06 \x03(\x0b\x32\x0b.vg.Subpath\x12\x17\n\x0fmapping_quality\x18\x07 \x01(\x05\x12\r\n\x05start\x18\x08 \x03(\r\x12\x18\n\x10paired_read_name\x18\t \x01(\t\x12+\n\nannotation\x18\x64 \x01(\x0b\x32\x17.google.protobuf.Struct\">\n\x07Subpath\x12\x16\n\x04path\x18\x01 \x01(\x0b\x32\x08.vg.Path\x12\x0c\n\x04next\x18\x02 \x03(\r\x12\r\n\x05score\x18\x03 \x01(\x05\"R\n\tKmerMatch\x12\x10\n\x08sequence\x18\x01 \x01(\t\x12\x0f\n\x07node_id\x18\x02 \x01(\x03\x12\x10\n\x08position\x18\x03 \x01(\x11\x12\x10\n\x08\x62\x61\x63kward\x18\x04 \x01(\x08\"S\n\nBasePileup\x12\x10\n\x08ref_base\x18\x01 \x01(\x05\x12\x11\n\tnum_bases\x18\x02 \x01(\x05\x12\r\n\x05\x62\x61ses\x18\x03 \x01(\t\x12\x11\n\tqualities\x18\x04 \x01(\x0c\"B\n\nNodePileup\x12\x0f\n\x07node_id\x18\x01 \x01(\x03\x12#\n\x0b\x62\x61se_pileup\x18\x02 \x03(\x0b\x32\x0e.vg.BasePileup\"e\n\nEdgePileup\x12\x16\n\x04\x65\x64ge\x18\x01 \x01(\x0b\x32\x08.vg.Edge\x12\x11\n\tnum_reads\x18\x02 \x01(\x05\x12\x19\n\x11num_forward_reads\x18\x03 \x01(\x05\x12\x11\n\tqualities\x18\x04 \x01(\x0c\"T\n\x06Pileup\x12$\n\x0cnode_pileups\x18\x01 \x03(\x0b\x32\x0e.vg.NodePileup\x12$\n\x0c\x65\x64ge_pileups\x18\x02 \x03(\x0b\x32\x0e.vg.EdgePileup\"\xfa\x01\n\x05Snarl\x12\x1b\n\x04type\x18\x01 \x01(\x0e\x32\r.vg.SnarlType\x12\x18\n\x05start\x18\x02 \x01(\x0b\x32\t.vg.Visit\x12\x16\n\x03\x65nd\x18\x03 \x01(\x0b\x32\t.vg.Visit\x12\x19\n\x06parent\x18\x04 \x01(\x0b\x32\t.vg.Snarl\x12\x0c\n\x04name\x18\x05 \x01(\t\x12\x1c\n\x14start_self_reachable\x18\x06 \x01(\x08\x12\x1a\n\x12\x65nd_self_reachable\x18\x07 \x01(\x08\x12\x1b\n\x13start_end_reachable\x18\x08 \x01(\x08\x12\"\n\x1a\x64irected_acyclic_net_graph\x18\t \x01(\x08\"D\n\x05Visit\x12\x0f\n\x07node_id\x18\x01 \x01(\x03\x12\x18\n\x05snarl\x18\x02 \x01(\x0b\x32\t.vg.Snarl\x12\x10\n\x08\x62\x61\x63kward\x18\x03 \x01(\x08\"8\n\x0eSnarlTraversal\x12\x18\n\x05visit\x18\x01 \x03(\x0b\x32\t.vg.Visit\x12\x0c\n\x04name\x18\x02 \x01(\t\"\xb2\x01\n\x05Locus\x12\x0c\n\x04name\x18\x01 \x01(\t\x12\x18\n\x06\x61llele\x18\x02 \x03(\x0b\x32\x08.vg.Path\x12\x1c\n\x07support\x18\x03 \x03(\x0b\x32\x0b.vg.Support\x12\x1e\n\x08genotype\x18\x04 \x03(\x0b\x32\x0c.vg.Genotype\x12$\n\x0foverall_support\x18\x05 \x01(\x0b\x32\x0b.vg.Support\x12\x1d\n\x15\x61llele_log_likelihood\x18\x06 \x03(\x01\"\x83\x01\n\x08Genotype\x12\x0e\n\x06\x61llele\x18\x01 \x03(\x05\x12\x11\n\tis_phased\x18\x02 \x01(\x08\x12\x12\n\nlikelihood\x18\x03 \x01(\x01\x12\x16\n\x0elog_likelihood\x18\x04 \x01(\x01\x12\x11\n\tlog_prior\x18\x05 \x01(\x01\x12\x15\n\rlog_posterior\x18\x06 \x01(\x01\"Y\n\x07Support\x12\x0f\n\x07quality\x18\x01 \x01(\x01\x12\x0f\n\x07\x66orward\x18\x02 \x01(\x01\x12\x0f\n\x07reverse\x18\x03 \x01(\x01\x12\x0c\n\x04left\x18\x04 \x01(\x01\x12\r\n\x05right\x18\x05 \x01(\x01\"n\n\x0fLocationSupport\x12\x1c\n\x07support\x18\x01 \x01(\x0b\x32\x0b.vg.Support\x12\x18\n\x04\x65\x64ge\x18\x02 \x01(\x0b\x32\x08.vg.EdgeH\x00\x12\x11\n\x07node_id\x18\x03 \x01(\x03H\x00\x42\x10\n\x0eoneof_location\";\n\x0bTranslation\x12\x16\n\x04\x66rom\x18\x01 \x01(\x0b\x32\x08.vg.Path\x12\x14\n\x02to\x18\x02 \x01(\x0b\x32\x08.vg.Path*9\n\tSnarlType\x12\x10\n\x0cUNCLASSIFIED\x10\x00\x12\x0f\n\x0bULTRABUBBLE\x10\x01\x12\t\n\x05UNARY\x10\x02\x62\x06proto3') | |
| , | |
| dependencies=[google_dot_protobuf_dot_struct__pb2.DESCRIPTOR,]) | |
| _sym_db.RegisterFileDescriptor(DESCRIPTOR) | |
| _SNARLTYPE = _descriptor.EnumDescriptor( | |
| name='SnarlType', | |
| full_name='vg.SnarlType', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| values=[ | |
| _descriptor.EnumValueDescriptor( | |
| name='UNCLASSIFIED', index=0, number=0, | |
| options=None, | |
| type=None), | |
| _descriptor.EnumValueDescriptor( | |
| name='ULTRABUBBLE', index=1, number=1, | |
| options=None, | |
| type=None), | |
| _descriptor.EnumValueDescriptor( | |
| name='UNARY', index=2, number=2, | |
| options=None, | |
| type=None), | |
| ], | |
| containing_type=None, | |
| options=None, | |
| serialized_start=3203, | |
| serialized_end=3260, | |
| ) | |
| _sym_db.RegisterEnumDescriptor(_SNARLTYPE) | |
| SnarlType = enum_type_wrapper.EnumTypeWrapper(_SNARLTYPE) | |
| UNCLASSIFIED = 0 | |
| ULTRABUBBLE = 1 | |
| UNARY = 2 | |
| _GRAPH = _descriptor.Descriptor( | |
| name='Graph', | |
| full_name='vg.Graph', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='node', full_name='vg.Graph.node', index=0, | |
| number=1, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='edge', full_name='vg.Graph.edge', index=1, | |
| number=2, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='path', full_name='vg.Graph.path', index=2, | |
| number=3, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=46, | |
| serialized_end=125, | |
| ) | |
| _NODE = _descriptor.Descriptor( | |
| name='Node', | |
| full_name='vg.Node', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='sequence', full_name='vg.Node.sequence', index=0, | |
| number=1, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='name', full_name='vg.Node.name', index=1, | |
| number=2, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='id', full_name='vg.Node.id', index=2, | |
| number=3, type=3, cpp_type=2, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=127, | |
| serialized_end=177, | |
| ) | |
| _EDGE = _descriptor.Descriptor( | |
| name='Edge', | |
| full_name='vg.Edge', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='from', full_name='vg.Edge.from', index=0, | |
| number=1, type=3, cpp_type=2, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='to', full_name='vg.Edge.to', index=1, | |
| number=2, type=3, cpp_type=2, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='from_start', full_name='vg.Edge.from_start', index=2, | |
| number=3, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='to_end', full_name='vg.Edge.to_end', index=3, | |
| number=4, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='overlap', full_name='vg.Edge.overlap', index=4, | |
| number=5, type=5, cpp_type=1, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=179, | |
| serialized_end=264, | |
| ) | |
| _EDIT = _descriptor.Descriptor( | |
| name='Edit', | |
| full_name='vg.Edit', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='from_length', full_name='vg.Edit.from_length', index=0, | |
| number=1, type=5, cpp_type=1, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='to_length', full_name='vg.Edit.to_length', index=1, | |
| number=2, type=5, cpp_type=1, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='sequence', full_name='vg.Edit.sequence', index=2, | |
| number=3, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=266, | |
| serialized_end=330, | |
| ) | |
| _MAPPING = _descriptor.Descriptor( | |
| name='Mapping', | |
| full_name='vg.Mapping', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='position', full_name='vg.Mapping.position', index=0, | |
| number=1, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='edit', full_name='vg.Mapping.edit', index=1, | |
| number=2, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='rank', full_name='vg.Mapping.rank', index=2, | |
| number=5, type=3, cpp_type=2, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=332, | |
| serialized_end=411, | |
| ) | |
| _POSITION = _descriptor.Descriptor( | |
| name='Position', | |
| full_name='vg.Position', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='node_id', full_name='vg.Position.node_id', index=0, | |
| number=1, type=3, cpp_type=2, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='offset', full_name='vg.Position.offset', index=1, | |
| number=2, type=3, cpp_type=2, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='is_reverse', full_name='vg.Position.is_reverse', index=2, | |
| number=4, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='name', full_name='vg.Position.name', index=3, | |
| number=5, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=413, | |
| serialized_end=490, | |
| ) | |
| _PATH = _descriptor.Descriptor( | |
| name='Path', | |
| full_name='vg.Path', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='name', full_name='vg.Path.name', index=0, | |
| number=1, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='mapping', full_name='vg.Path.mapping', index=1, | |
| number=2, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='is_circular', full_name='vg.Path.is_circular', index=2, | |
| number=3, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='length', full_name='vg.Path.length', index=3, | |
| number=4, type=3, cpp_type=2, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=492, | |
| serialized_end=579, | |
| ) | |
| _ALIGNMENT = _descriptor.Descriptor( | |
| name='Alignment', | |
| full_name='vg.Alignment', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='sequence', full_name='vg.Alignment.sequence', index=0, | |
| number=1, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='path', full_name='vg.Alignment.path', index=1, | |
| number=2, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='name', full_name='vg.Alignment.name', index=2, | |
| number=3, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='quality', full_name='vg.Alignment.quality', index=3, | |
| number=4, type=12, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b(""), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='mapping_quality', full_name='vg.Alignment.mapping_quality', index=4, | |
| number=5, type=5, cpp_type=1, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='score', full_name='vg.Alignment.score', index=5, | |
| number=6, type=5, cpp_type=1, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='query_position', full_name='vg.Alignment.query_position', index=6, | |
| number=7, type=5, cpp_type=1, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='sample_name', full_name='vg.Alignment.sample_name', index=7, | |
| number=9, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='read_group', full_name='vg.Alignment.read_group', index=8, | |
| number=10, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='fragment_prev', full_name='vg.Alignment.fragment_prev', index=9, | |
| number=11, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='fragment_next', full_name='vg.Alignment.fragment_next', index=10, | |
| number=12, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='is_secondary', full_name='vg.Alignment.is_secondary', index=11, | |
| number=15, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='identity', full_name='vg.Alignment.identity', index=12, | |
| number=16, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='fragment', full_name='vg.Alignment.fragment', index=13, | |
| number=17, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='locus', full_name='vg.Alignment.locus', index=14, | |
| number=18, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='refpos', full_name='vg.Alignment.refpos', index=15, | |
| number=19, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='read_paired', full_name='vg.Alignment.read_paired', index=16, | |
| number=20, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='read_mapped', full_name='vg.Alignment.read_mapped', index=17, | |
| number=21, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='mate_unmapped', full_name='vg.Alignment.mate_unmapped', index=18, | |
| number=22, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='read_on_reverse_strand', full_name='vg.Alignment.read_on_reverse_strand', index=19, | |
| number=23, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='mate_on_reverse_strand', full_name='vg.Alignment.mate_on_reverse_strand', index=20, | |
| number=24, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='soft_clipped', full_name='vg.Alignment.soft_clipped', index=21, | |
| number=25, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='discordant_insert_size', full_name='vg.Alignment.discordant_insert_size', index=22, | |
| number=26, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='uniqueness', full_name='vg.Alignment.uniqueness', index=23, | |
| number=27, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='correct', full_name='vg.Alignment.correct', index=24, | |
| number=28, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='secondary_score', full_name='vg.Alignment.secondary_score', index=25, | |
| number=29, type=5, cpp_type=1, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='fragment_score', full_name='vg.Alignment.fragment_score', index=26, | |
| number=30, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='mate_mapped_to_disjoint_subgraph', full_name='vg.Alignment.mate_mapped_to_disjoint_subgraph', index=27, | |
| number=31, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='fragment_length_distribution', full_name='vg.Alignment.fragment_length_distribution', index=28, | |
| number=32, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='haplotype_scored', full_name='vg.Alignment.haplotype_scored', index=29, | |
| number=33, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='haplotype_logprob', full_name='vg.Alignment.haplotype_logprob', index=30, | |
| number=34, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='time_used', full_name='vg.Alignment.time_used', index=31, | |
| number=35, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='to_correct', full_name='vg.Alignment.to_correct', index=32, | |
| number=36, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='correctly_mapped', full_name='vg.Alignment.correctly_mapped', index=33, | |
| number=37, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='annotation', full_name='vg.Alignment.annotation', index=34, | |
| number=100, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=582, | |
| serialized_end=1497, | |
| ) | |
| _MULTIPATHALIGNMENT = _descriptor.Descriptor( | |
| name='MultipathAlignment', | |
| full_name='vg.MultipathAlignment', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='sequence', full_name='vg.MultipathAlignment.sequence', index=0, | |
| number=1, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='quality', full_name='vg.MultipathAlignment.quality', index=1, | |
| number=2, type=12, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b(""), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='name', full_name='vg.MultipathAlignment.name', index=2, | |
| number=3, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='sample_name', full_name='vg.MultipathAlignment.sample_name', index=3, | |
| number=4, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='read_group', full_name='vg.MultipathAlignment.read_group', index=4, | |
| number=5, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='subpath', full_name='vg.MultipathAlignment.subpath', index=5, | |
| number=6, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='mapping_quality', full_name='vg.MultipathAlignment.mapping_quality', index=6, | |
| number=7, type=5, cpp_type=1, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='start', full_name='vg.MultipathAlignment.start', index=7, | |
| number=8, type=13, cpp_type=3, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='paired_read_name', full_name='vg.MultipathAlignment.paired_read_name', index=8, | |
| number=9, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='annotation', full_name='vg.MultipathAlignment.annotation', index=9, | |
| number=100, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=1500, | |
| serialized_end=1751, | |
| ) | |
| _SUBPATH = _descriptor.Descriptor( | |
| name='Subpath', | |
| full_name='vg.Subpath', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='path', full_name='vg.Subpath.path', index=0, | |
| number=1, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='next', full_name='vg.Subpath.next', index=1, | |
| number=2, type=13, cpp_type=3, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='score', full_name='vg.Subpath.score', index=2, | |
| number=3, type=5, cpp_type=1, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=1753, | |
| serialized_end=1815, | |
| ) | |
| _KMERMATCH = _descriptor.Descriptor( | |
| name='KmerMatch', | |
| full_name='vg.KmerMatch', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='sequence', full_name='vg.KmerMatch.sequence', index=0, | |
| number=1, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='node_id', full_name='vg.KmerMatch.node_id', index=1, | |
| number=2, type=3, cpp_type=2, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='position', full_name='vg.KmerMatch.position', index=2, | |
| number=3, type=17, cpp_type=1, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='backward', full_name='vg.KmerMatch.backward', index=3, | |
| number=4, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=1817, | |
| serialized_end=1899, | |
| ) | |
| _BASEPILEUP = _descriptor.Descriptor( | |
| name='BasePileup', | |
| full_name='vg.BasePileup', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='ref_base', full_name='vg.BasePileup.ref_base', index=0, | |
| number=1, type=5, cpp_type=1, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='num_bases', full_name='vg.BasePileup.num_bases', index=1, | |
| number=2, type=5, cpp_type=1, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='bases', full_name='vg.BasePileup.bases', index=2, | |
| number=3, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='qualities', full_name='vg.BasePileup.qualities', index=3, | |
| number=4, type=12, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b(""), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=1901, | |
| serialized_end=1984, | |
| ) | |
| _NODEPILEUP = _descriptor.Descriptor( | |
| name='NodePileup', | |
| full_name='vg.NodePileup', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='node_id', full_name='vg.NodePileup.node_id', index=0, | |
| number=1, type=3, cpp_type=2, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='base_pileup', full_name='vg.NodePileup.base_pileup', index=1, | |
| number=2, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=1986, | |
| serialized_end=2052, | |
| ) | |
| _EDGEPILEUP = _descriptor.Descriptor( | |
| name='EdgePileup', | |
| full_name='vg.EdgePileup', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='edge', full_name='vg.EdgePileup.edge', index=0, | |
| number=1, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='num_reads', full_name='vg.EdgePileup.num_reads', index=1, | |
| number=2, type=5, cpp_type=1, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='num_forward_reads', full_name='vg.EdgePileup.num_forward_reads', index=2, | |
| number=3, type=5, cpp_type=1, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='qualities', full_name='vg.EdgePileup.qualities', index=3, | |
| number=4, type=12, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b(""), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=2054, | |
| serialized_end=2155, | |
| ) | |
| _PILEUP = _descriptor.Descriptor( | |
| name='Pileup', | |
| full_name='vg.Pileup', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='node_pileups', full_name='vg.Pileup.node_pileups', index=0, | |
| number=1, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='edge_pileups', full_name='vg.Pileup.edge_pileups', index=1, | |
| number=2, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=2157, | |
| serialized_end=2241, | |
| ) | |
| _SNARL = _descriptor.Descriptor( | |
| name='Snarl', | |
| full_name='vg.Snarl', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='type', full_name='vg.Snarl.type', index=0, | |
| number=1, type=14, cpp_type=8, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='start', full_name='vg.Snarl.start', index=1, | |
| number=2, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='end', full_name='vg.Snarl.end', index=2, | |
| number=3, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='parent', full_name='vg.Snarl.parent', index=3, | |
| number=4, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='name', full_name='vg.Snarl.name', index=4, | |
| number=5, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='start_self_reachable', full_name='vg.Snarl.start_self_reachable', index=5, | |
| number=6, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='end_self_reachable', full_name='vg.Snarl.end_self_reachable', index=6, | |
| number=7, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='start_end_reachable', full_name='vg.Snarl.start_end_reachable', index=7, | |
| number=8, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='directed_acyclic_net_graph', full_name='vg.Snarl.directed_acyclic_net_graph', index=8, | |
| number=9, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=2244, | |
| serialized_end=2494, | |
| ) | |
| _VISIT = _descriptor.Descriptor( | |
| name='Visit', | |
| full_name='vg.Visit', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='node_id', full_name='vg.Visit.node_id', index=0, | |
| number=1, type=3, cpp_type=2, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='snarl', full_name='vg.Visit.snarl', index=1, | |
| number=2, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='backward', full_name='vg.Visit.backward', index=2, | |
| number=3, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=2496, | |
| serialized_end=2564, | |
| ) | |
| _SNARLTRAVERSAL = _descriptor.Descriptor( | |
| name='SnarlTraversal', | |
| full_name='vg.SnarlTraversal', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='visit', full_name='vg.SnarlTraversal.visit', index=0, | |
| number=1, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='name', full_name='vg.SnarlTraversal.name', index=1, | |
| number=2, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=2566, | |
| serialized_end=2622, | |
| ) | |
| _LOCUS = _descriptor.Descriptor( | |
| name='Locus', | |
| full_name='vg.Locus', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='name', full_name='vg.Locus.name', index=0, | |
| number=1, type=9, cpp_type=9, label=1, | |
| has_default_value=False, default_value=_b("").decode('utf-8'), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='allele', full_name='vg.Locus.allele', index=1, | |
| number=2, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='support', full_name='vg.Locus.support', index=2, | |
| number=3, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='genotype', full_name='vg.Locus.genotype', index=3, | |
| number=4, type=11, cpp_type=10, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='overall_support', full_name='vg.Locus.overall_support', index=4, | |
| number=5, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='allele_log_likelihood', full_name='vg.Locus.allele_log_likelihood', index=5, | |
| number=6, type=1, cpp_type=5, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=2625, | |
| serialized_end=2803, | |
| ) | |
| _GENOTYPE = _descriptor.Descriptor( | |
| name='Genotype', | |
| full_name='vg.Genotype', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='allele', full_name='vg.Genotype.allele', index=0, | |
| number=1, type=5, cpp_type=1, label=3, | |
| has_default_value=False, default_value=[], | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='is_phased', full_name='vg.Genotype.is_phased', index=1, | |
| number=2, type=8, cpp_type=7, label=1, | |
| has_default_value=False, default_value=False, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='likelihood', full_name='vg.Genotype.likelihood', index=2, | |
| number=3, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='log_likelihood', full_name='vg.Genotype.log_likelihood', index=3, | |
| number=4, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='log_prior', full_name='vg.Genotype.log_prior', index=4, | |
| number=5, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='log_posterior', full_name='vg.Genotype.log_posterior', index=5, | |
| number=6, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=2806, | |
| serialized_end=2937, | |
| ) | |
| _SUPPORT = _descriptor.Descriptor( | |
| name='Support', | |
| full_name='vg.Support', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='quality', full_name='vg.Support.quality', index=0, | |
| number=1, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='forward', full_name='vg.Support.forward', index=1, | |
| number=2, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='reverse', full_name='vg.Support.reverse', index=2, | |
| number=3, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='left', full_name='vg.Support.left', index=3, | |
| number=4, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='right', full_name='vg.Support.right', index=4, | |
| number=5, type=1, cpp_type=5, label=1, | |
| has_default_value=False, default_value=float(0), | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=2939, | |
| serialized_end=3028, | |
| ) | |
| _LOCATIONSUPPORT = _descriptor.Descriptor( | |
| name='LocationSupport', | |
| full_name='vg.LocationSupport', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='support', full_name='vg.LocationSupport.support', index=0, | |
| number=1, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='edge', full_name='vg.LocationSupport.edge', index=1, | |
| number=2, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='node_id', full_name='vg.LocationSupport.node_id', index=2, | |
| number=3, type=3, cpp_type=2, label=1, | |
| has_default_value=False, default_value=0, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| _descriptor.OneofDescriptor( | |
| name='oneof_location', full_name='vg.LocationSupport.oneof_location', | |
| index=0, containing_type=None, fields=[]), | |
| ], | |
| serialized_start=3030, | |
| serialized_end=3140, | |
| ) | |
| _TRANSLATION = _descriptor.Descriptor( | |
| name='Translation', | |
| full_name='vg.Translation', | |
| filename=None, | |
| file=DESCRIPTOR, | |
| containing_type=None, | |
| fields=[ | |
| _descriptor.FieldDescriptor( | |
| name='from', full_name='vg.Translation.from', index=0, | |
| number=1, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| _descriptor.FieldDescriptor( | |
| name='to', full_name='vg.Translation.to', index=1, | |
| number=2, type=11, cpp_type=10, label=1, | |
| has_default_value=False, default_value=None, | |
| message_type=None, enum_type=None, containing_type=None, | |
| is_extension=False, extension_scope=None, | |
| options=None), | |
| ], | |
| extensions=[ | |
| ], | |
| nested_types=[], | |
| enum_types=[ | |
| ], | |
| options=None, | |
| is_extendable=False, | |
| syntax='proto3', | |
| extension_ranges=[], | |
| oneofs=[ | |
| ], | |
| serialized_start=3142, | |
| serialized_end=3201, | |
| ) | |
| _GRAPH.fields_by_name['node'].message_type = _NODE | |
| _GRAPH.fields_by_name['edge'].message_type = _EDGE | |
| _GRAPH.fields_by_name['path'].message_type = _PATH | |
| _MAPPING.fields_by_name['position'].message_type = _POSITION | |
| _MAPPING.fields_by_name['edit'].message_type = _EDIT | |
| _PATH.fields_by_name['mapping'].message_type = _MAPPING | |
| _ALIGNMENT.fields_by_name['path'].message_type = _PATH | |
| _ALIGNMENT.fields_by_name['fragment_prev'].message_type = _ALIGNMENT | |
| _ALIGNMENT.fields_by_name['fragment_next'].message_type = _ALIGNMENT | |
| _ALIGNMENT.fields_by_name['fragment'].message_type = _PATH | |
| _ALIGNMENT.fields_by_name['locus'].message_type = _LOCUS | |
| _ALIGNMENT.fields_by_name['refpos'].message_type = _POSITION | |
| _ALIGNMENT.fields_by_name['to_correct'].message_type = _POSITION | |
| _ALIGNMENT.fields_by_name['annotation'].message_type = google_dot_protobuf_dot_struct__pb2._STRUCT | |
| _MULTIPATHALIGNMENT.fields_by_name['subpath'].message_type = _SUBPATH | |
| _MULTIPATHALIGNMENT.fields_by_name['annotation'].message_type = google_dot_protobuf_dot_struct__pb2._STRUCT | |
| _SUBPATH.fields_by_name['path'].message_type = _PATH | |
| _NODEPILEUP.fields_by_name['base_pileup'].message_type = _BASEPILEUP | |
| _EDGEPILEUP.fields_by_name['edge'].message_type = _EDGE | |
| _PILEUP.fields_by_name['node_pileups'].message_type = _NODEPILEUP | |
| _PILEUP.fields_by_name['edge_pileups'].message_type = _EDGEPILEUP | |
| _SNARL.fields_by_name['type'].enum_type = _SNARLTYPE | |
| _SNARL.fields_by_name['start'].message_type = _VISIT | |
| _SNARL.fields_by_name['end'].message_type = _VISIT | |
| _SNARL.fields_by_name['parent'].message_type = _SNARL | |
| _VISIT.fields_by_name['snarl'].message_type = _SNARL | |
| _SNARLTRAVERSAL.fields_by_name['visit'].message_type = _VISIT | |
| _LOCUS.fields_by_name['allele'].message_type = _PATH | |
| _LOCUS.fields_by_name['support'].message_type = _SUPPORT | |
| _LOCUS.fields_by_name['genotype'].message_type = _GENOTYPE | |
| _LOCUS.fields_by_name['overall_support'].message_type = _SUPPORT | |
| _LOCATIONSUPPORT.fields_by_name['support'].message_type = _SUPPORT | |
| _LOCATIONSUPPORT.fields_by_name['edge'].message_type = _EDGE | |
| _LOCATIONSUPPORT.oneofs_by_name['oneof_location'].fields.append( | |
| _LOCATIONSUPPORT.fields_by_name['edge']) | |
| _LOCATIONSUPPORT.fields_by_name['edge'].containing_oneof = _LOCATIONSUPPORT.oneofs_by_name['oneof_location'] | |
| _LOCATIONSUPPORT.oneofs_by_name['oneof_location'].fields.append( | |
| _LOCATIONSUPPORT.fields_by_name['node_id']) | |
| _LOCATIONSUPPORT.fields_by_name['node_id'].containing_oneof = _LOCATIONSUPPORT.oneofs_by_name['oneof_location'] | |
| _TRANSLATION.fields_by_name['from'].message_type = _PATH | |
| _TRANSLATION.fields_by_name['to'].message_type = _PATH | |
| DESCRIPTOR.message_types_by_name['Graph'] = _GRAPH | |
| DESCRIPTOR.message_types_by_name['Node'] = _NODE | |
| DESCRIPTOR.message_types_by_name['Edge'] = _EDGE | |
| DESCRIPTOR.message_types_by_name['Edit'] = _EDIT | |
| DESCRIPTOR.message_types_by_name['Mapping'] = _MAPPING | |
| DESCRIPTOR.message_types_by_name['Position'] = _POSITION | |
| DESCRIPTOR.message_types_by_name['Path'] = _PATH | |
| DESCRIPTOR.message_types_by_name['Alignment'] = _ALIGNMENT | |
| DESCRIPTOR.message_types_by_name['MultipathAlignment'] = _MULTIPATHALIGNMENT | |
| DESCRIPTOR.message_types_by_name['Subpath'] = _SUBPATH | |
| DESCRIPTOR.message_types_by_name['KmerMatch'] = _KMERMATCH | |
| DESCRIPTOR.message_types_by_name['BasePileup'] = _BASEPILEUP | |
| DESCRIPTOR.message_types_by_name['NodePileup'] = _NODEPILEUP | |
| DESCRIPTOR.message_types_by_name['EdgePileup'] = _EDGEPILEUP | |
| DESCRIPTOR.message_types_by_name['Pileup'] = _PILEUP | |
| DESCRIPTOR.message_types_by_name['Snarl'] = _SNARL | |
| DESCRIPTOR.message_types_by_name['Visit'] = _VISIT | |
| DESCRIPTOR.message_types_by_name['SnarlTraversal'] = _SNARLTRAVERSAL | |
| DESCRIPTOR.message_types_by_name['Locus'] = _LOCUS | |
| DESCRIPTOR.message_types_by_name['Genotype'] = _GENOTYPE | |
| DESCRIPTOR.message_types_by_name['Support'] = _SUPPORT | |
| DESCRIPTOR.message_types_by_name['LocationSupport'] = _LOCATIONSUPPORT | |
| DESCRIPTOR.message_types_by_name['Translation'] = _TRANSLATION | |
| DESCRIPTOR.enum_types_by_name['SnarlType'] = _SNARLTYPE | |
| Graph = _reflection.GeneratedProtocolMessageType('Graph', (_message.Message,), dict( | |
| DESCRIPTOR = _GRAPH, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Graph) | |
| )) | |
| _sym_db.RegisterMessage(Graph) | |
| Node = _reflection.GeneratedProtocolMessageType('Node', (_message.Message,), dict( | |
| DESCRIPTOR = _NODE, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Node) | |
| )) | |
| _sym_db.RegisterMessage(Node) | |
| Edge = _reflection.GeneratedProtocolMessageType('Edge', (_message.Message,), dict( | |
| DESCRIPTOR = _EDGE, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Edge) | |
| )) | |
| _sym_db.RegisterMessage(Edge) | |
| Edit = _reflection.GeneratedProtocolMessageType('Edit', (_message.Message,), dict( | |
| DESCRIPTOR = _EDIT, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Edit) | |
| )) | |
| _sym_db.RegisterMessage(Edit) | |
| Mapping = _reflection.GeneratedProtocolMessageType('Mapping', (_message.Message,), dict( | |
| DESCRIPTOR = _MAPPING, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Mapping) | |
| )) | |
| _sym_db.RegisterMessage(Mapping) | |
| Position = _reflection.GeneratedProtocolMessageType('Position', (_message.Message,), dict( | |
| DESCRIPTOR = _POSITION, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Position) | |
| )) | |
| _sym_db.RegisterMessage(Position) | |
| Path = _reflection.GeneratedProtocolMessageType('Path', (_message.Message,), dict( | |
| DESCRIPTOR = _PATH, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Path) | |
| )) | |
| _sym_db.RegisterMessage(Path) | |
| Alignment = _reflection.GeneratedProtocolMessageType('Alignment', (_message.Message,), dict( | |
| DESCRIPTOR = _ALIGNMENT, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Alignment) | |
| )) | |
| _sym_db.RegisterMessage(Alignment) | |
| MultipathAlignment = _reflection.GeneratedProtocolMessageType('MultipathAlignment', (_message.Message,), dict( | |
| DESCRIPTOR = _MULTIPATHALIGNMENT, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.MultipathAlignment) | |
| )) | |
| _sym_db.RegisterMessage(MultipathAlignment) | |
| Subpath = _reflection.GeneratedProtocolMessageType('Subpath', (_message.Message,), dict( | |
| DESCRIPTOR = _SUBPATH, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Subpath) | |
| )) | |
| _sym_db.RegisterMessage(Subpath) | |
| KmerMatch = _reflection.GeneratedProtocolMessageType('KmerMatch', (_message.Message,), dict( | |
| DESCRIPTOR = _KMERMATCH, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.KmerMatch) | |
| )) | |
| _sym_db.RegisterMessage(KmerMatch) | |
| BasePileup = _reflection.GeneratedProtocolMessageType('BasePileup', (_message.Message,), dict( | |
| DESCRIPTOR = _BASEPILEUP, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.BasePileup) | |
| )) | |
| _sym_db.RegisterMessage(BasePileup) | |
| NodePileup = _reflection.GeneratedProtocolMessageType('NodePileup', (_message.Message,), dict( | |
| DESCRIPTOR = _NODEPILEUP, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.NodePileup) | |
| )) | |
| _sym_db.RegisterMessage(NodePileup) | |
| EdgePileup = _reflection.GeneratedProtocolMessageType('EdgePileup', (_message.Message,), dict( | |
| DESCRIPTOR = _EDGEPILEUP, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.EdgePileup) | |
| )) | |
| _sym_db.RegisterMessage(EdgePileup) | |
| Pileup = _reflection.GeneratedProtocolMessageType('Pileup', (_message.Message,), dict( | |
| DESCRIPTOR = _PILEUP, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Pileup) | |
| )) | |
| _sym_db.RegisterMessage(Pileup) | |
| Snarl = _reflection.GeneratedProtocolMessageType('Snarl', (_message.Message,), dict( | |
| DESCRIPTOR = _SNARL, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Snarl) | |
| )) | |
| _sym_db.RegisterMessage(Snarl) | |
| Visit = _reflection.GeneratedProtocolMessageType('Visit', (_message.Message,), dict( | |
| DESCRIPTOR = _VISIT, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Visit) | |
| )) | |
| _sym_db.RegisterMessage(Visit) | |
| SnarlTraversal = _reflection.GeneratedProtocolMessageType('SnarlTraversal', (_message.Message,), dict( | |
| DESCRIPTOR = _SNARLTRAVERSAL, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.SnarlTraversal) | |
| )) | |
| _sym_db.RegisterMessage(SnarlTraversal) | |
| Locus = _reflection.GeneratedProtocolMessageType('Locus', (_message.Message,), dict( | |
| DESCRIPTOR = _LOCUS, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Locus) | |
| )) | |
| _sym_db.RegisterMessage(Locus) | |
| Genotype = _reflection.GeneratedProtocolMessageType('Genotype', (_message.Message,), dict( | |
| DESCRIPTOR = _GENOTYPE, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Genotype) | |
| )) | |
| _sym_db.RegisterMessage(Genotype) | |
| Support = _reflection.GeneratedProtocolMessageType('Support', (_message.Message,), dict( | |
| DESCRIPTOR = _SUPPORT, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Support) | |
| )) | |
| _sym_db.RegisterMessage(Support) | |
| LocationSupport = _reflection.GeneratedProtocolMessageType('LocationSupport', (_message.Message,), dict( | |
| DESCRIPTOR = _LOCATIONSUPPORT, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.LocationSupport) | |
| )) | |
| _sym_db.RegisterMessage(LocationSupport) | |
| Translation = _reflection.GeneratedProtocolMessageType('Translation', (_message.Message,), dict( | |
| DESCRIPTOR = _TRANSLATION, | |
| __module__ = 'vg_pb2' | |
| # @@protoc_insertion_point(class_scope:vg.Translation) | |
| )) | |
| _sym_db.RegisterMessage(Translation) | |
| # @@protoc_insertion_point(module_scope) |