diff --git a/bin/preprocess_dataset b/bin/preprocess_dataset index b14954e..9b0ed60 100755 --- a/bin/preprocess_dataset +++ b/bin/preprocess_dataset @@ -76,6 +76,7 @@ The version of the genome can be given as an optional parameter. It defaults to parser.add_argument('--min_length', type=int, default=8, help='minimum binding site length (default: 8)') parser.add_argument('--max_length', type=int, default=75, help='maximum binding site length (default: 75)') parser.add_argument('--elongation', '-e', type=int, default=20, help='span for up- and downstream elongation of binding sites (default: 20)') + parser.add_argument('--skip_check', '-s', action='store_true', help='skip check for installed prerequisites') return parser.parse_args() def checkPrereqs(): @@ -238,7 +239,7 @@ def main(args): options = parseArguments(args) #Check required programs bedtools, RNAshapes, and RNAstructures - if not checkPrereqs(): + if not options.skip_check and not checkPrereqs(): return #Prepare folder structure