From 5850d053faedb4baa6cdee48c660ca49f705a8b4 Mon Sep 17 00:00:00 2001
From: Jens Preussner <jens.preussner@mpi-bn.mpg.de>
Date: Mon, 18 Jun 2018 13:45:49 +0200
Subject: [PATCH] Fixed bug/dependencies for Salmon container creation.

---
 environment.yml        | 1 +
 src/createSCE_salmon.R | 1 -
 2 files changed, 1 insertion(+), 1 deletion(-)

diff --git a/environment.yml b/environment.yml
index 81d24ec..b7895b7 100644
--- a/environment.yml
+++ b/environment.yml
@@ -15,6 +15,7 @@ dependencies:
   - r-readr
   - r-dplyr
   - r-matrix
+  - r-rjson
   - bioconductor-tximport
   - bioconductor-singlecellexperiment
   - bioconductor-biomart
diff --git a/src/createSCE_salmon.R b/src/createSCE_salmon.R
index b958a28..5731215 100644
--- a/src/createSCE_salmon.R
+++ b/src/createSCE_salmon.R
@@ -2,7 +2,6 @@
 # Load libraries
 #
 library(tximport)
-library(DESeq2)
 library(biomaRt)
 library(SingleCellExperiment)