From 9a34ae01354aa0a38398792509d48bc574fd9aa0 Mon Sep 17 00:00:00 2001 From: Annika Fust Date: Wed, 13 Sep 2017 11:43:55 +0200 Subject: [PATCH] updated usage --- docs_rst/install.rst | 23 ----------------------- 1 file changed, 23 deletions(-) diff --git a/docs_rst/install.rst b/docs_rst/install.rst index df5c455..4fc2cc0 100644 --- a/docs_rst/install.rst +++ b/docs_rst/install.rst @@ -42,29 +42,6 @@ Futhermore, follow the subsequent instructions within R environment to install m - ``library(devtools)`` - ``install_github("jenzopr/Vennerable")`` -UROPA usage ------------ - -To effectively use UROPA, make yourself familiar with the command-line options: - -.. code:: bash - -$ uropa -Usage: uropa [options] - -Available options: - - -h, --help print this help message and further details on the configuration file - -i, --input filename of configuration file [mandatory] - -p, --prefix prefix for output files, can include subdirectories [basename of --input] - -r, --reformat create an additional compact and line-reduced table as result file - -s, --summary additional visualisation of results in graphical format will be created - -t n, --threads n multiprocessed run: n = number of threads to run annotation process - -add-comments show comment lines in output files explaining the columns - -l, --log log file name for messages and warnings - -d, --debug print verbose messages (for debugging purposes) - -v, --version print the version and exit - .. _Miniconda: https://conda.io/miniconda.html .. _Docker: http://www.docker.com