diff --git a/docs_rst/config.rst b/docs_rst/config.rst index 30c783a..7ddd352 100644 --- a/docs_rst/config.rst +++ b/docs_rst/config.rst @@ -78,6 +78,8 @@ Each query can specify the following keys: Default: ``'any_direction'`` Example: ``'direction': ['upstream','downstream']`` + + Visual repesentation in :ref:`Figure 1 ` of section :doc:`/uropa-example` - **internals**: This key represents a modifier with respect to the ``'distance'`` key. This can be helpful to annotate peaks to features with a wide size range, such as genes, which would otherwise be removed due to the distance thresholds. So even if the desired feature anchor is located too far away, a feature can still be included if it is overlapped. @@ -98,6 +100,7 @@ Each query can specify the following keys: Example: ``'internals':'center'`` + Visual repesentation in :ref:`Figure 1 ` of section :doc:`/uropa-example` - **filter.attribute** : Key filters the attributes found in the 9th column of the GTF file. If a ``'filter.attribute'`` is given, only features that have a ``'attribute.value'`` for this attribute is kept as valid annotations. If this key is set, the key ``'attribute.value'`` is mandatory, too (see below). diff --git a/docs_rst/img/Thumbs.db b/docs_rst/img/Thumbs.db index 3187129..edc1184 100644 Binary files a/docs_rst/img/Thumbs.db and b/docs_rst/img/Thumbs.db differ