From 9d041485d90d4ab6b0279baff98b5312ef518f9c Mon Sep 17 00:00:00 2001 From: Annika Fust Date: Wed, 13 Sep 2017 15:08:37 +0200 Subject: [PATCH] link to visual representation --- docs_rst/config.rst | 3 +++ docs_rst/img/Thumbs.db | Bin 236032 -> 236032 bytes 2 files changed, 3 insertions(+) diff --git a/docs_rst/config.rst b/docs_rst/config.rst index 30c783a..7ddd352 100644 --- a/docs_rst/config.rst +++ b/docs_rst/config.rst @@ -78,6 +78,8 @@ Each query can specify the following keys: Default: ``'any_direction'`` Example: ``'direction': ['upstream','downstream']`` + + Visual repesentation in :ref:`Figure 1 ` of section :doc:`/uropa-example` - **internals**: This key represents a modifier with respect to the ``'distance'`` key. This can be helpful to annotate peaks to features with a wide size range, such as genes, which would otherwise be removed due to the distance thresholds. So even if the desired feature anchor is located too far away, a feature can still be included if it is overlapped. @@ -98,6 +100,7 @@ Each query can specify the following keys: Example: ``'internals':'center'`` + Visual repesentation in :ref:`Figure 1 ` of section :doc:`/uropa-example` - **filter.attribute** : Key filters the attributes found in the 9th column of the GTF file. If a ``'filter.attribute'`` is given, only features that have a ``'attribute.value'`` for this attribute is kept as valid annotations. If this key is set, the key ``'attribute.value'`` is mandatory, too (see below). diff --git a/docs_rst/img/Thumbs.db b/docs_rst/img/Thumbs.db index 3187129e7603f2308f4f272593855fa7d044c317..edc1184515ddafc4e7dd7a7cfa117cfd3d8a48c7 100644 GIT binary patch delta 1096 zcmY+@OH30{6b9gXrqeROv{n!-P^CbLCW6oxw$VfuCK9aj2ysKARtmZ>(M1gEowl{v9gxU<}4b}O;qSGfv_VnZ?;3(Z~RMM^BuVI|(G&akZLi5{ukn205DTNyGq z-`37(oz;_{n_3qI#+KkW=&%eq_ya5O7gpgPtid{Lz$P#ZHa<1ukhkOA)`~tqBD}U` zC9z!3k91TcXJ zX0Sj3NKgnxPz*9y!3O)l4*Q`5O5p&MK{*@*2UI{MRDlx?!C|Ndmx-0I8U+05)ZyFB zxMExv;&K_RB zQ)?MPZEwA{nh`AB_6N9l2#;Xv&C0b&Jjh>M$u-M-EB=CIKuP7C^hSA~^NIQOh1@Ci z=OQ_ix89}K1po7dRNcZNI71X?iRPyXV(%!wXhJ3d7&5)G>{Y;BT*2`fRMt%!r}@|Wg&`IITl>d z)R&Z+3v6Q{CXEOx0UO2IPE;;pA;#H&atD2E~xphz}| zJ8&4UF3waza$ua(Ow*O>=t8ODsbkQN`4PJ1Tu?zq0>55~>ULFyUPQ!(sg_OBvNK4n?26p???O+qs6j$zO~3Z*=}7Ui;$bl#1gQ0} zOI}nn^SIa3{*C^ZSXRa(G;N>uGznpPYwIA3?jp?GM}AWD;hGOtfX(^9%Pl{I0lxLM zL7oW0XGm#7lV;l=Tt!Td`&lLpaYfh+*)F-224zC*u@1a`0`skZ-6+n>Gy`r`hk_NI zwkoFOVM*ymGGL?J%0p5X|6|%IG#0`v6f7E$g02I6`4r}vGq{;;%*GOLkkiwiqY}tm peuvEx+_P