diff --git a/docs_rst/uropa_gui.rst b/docs_rst/uropa_gui.rst index b69edc2..b0b8e47 100644 --- a/docs_rst/uropa_gui.rst +++ b/docs_rst/uropa_gui.rst @@ -9,7 +9,7 @@ Features --------- * **Input**: BED file of peaks or other genomic regions -* **Reference**: GTF file of desired target features (e.g. genes, transcripts, probes, repeats, ...); source = Gencode/Ensembl (102 organisms included) or custom upload +* **Reference**: GTF file of desired target features (e.g. genes, transcripts, probes, repeats, ...); source = Gencode/Ensembl (102 organisms included) or custom upload * **Association rules**: VERY diverse and easily combinable to a complex ruleset (see :doc:`/config`) * **Persistence**: Unique identifier is created on the server and results will remain available temporarily using the respective link * **Hosted**: Either online on our web server or as a local R Shiny installation @@ -25,13 +25,10 @@ Try UROPA GUI The `UROPA_GUI`_ contains all necessary data to quickly sample the capabilities of UROPA GUI. * **UROPA GUI user guide**: Stepwise tutorial. -* **Example data**: The following demo GTF and BED files are available on the server. - - Homo_sapiens.hg19.GRCh37.75_genes_v2.gft -> `Human GTF` file with reference genes - - ENCFF001VFA.pol2.sub.bed -> `POLR2A`_ ChIP-seq experiment (14989 peaks) -..note:: It is mandatory to select filter.attribute before attribute.value. Depending on the GTF file, it might take some time for attribute.value to be loaded. Please be patient! +* **Example data**: The following demo GTF and BED files are available on the server. Homo_sapiens.hg19.GRCh37.75_genes_v2.gft -> `Human GTF` file with reference genes ENCFF001VFA.pol2.sub.bed -> `POLR2A`_ ChIP-seq experiment (14989 peaks) + +.. note:: It is mandatory to select ``filter.attribute`` before ``attribute.value``. Depending on the GTF file, it might take some time for the ``attribute.value`` to be loaded. Please be patient! How to cite ------------