Term matching tables

The term matching table provides the basis to filter the information of the Json file. It includes labels, keywords and links to the information in the json file.

term	term_verbose	origin	handle_type	handle	example
ms_instrument	Mass Spectrometer (MS)	author;miape;jpr_guidelines_ms	list_path	Instruments.Q Exactive Plus - Orbitrap MS.InstrumentFriendName	Q Exactive Plus - Orbitrap MS
ms_vendor	MS Vendor	author;miape;jpr_guidelines_ms	literal	Thermo Scientific	Thermo Scientific
ms_model	MS Model	author;miape;jpr_guidelines_ms	literal	QExactive Plus	QExactive Plus
ms_instrumentsoftware	MS Instrument Software	author;miape	literal	Xcalibur	Xcalibur
ms_instrumentsoftwareversion	MS Instrument Software Version	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.SoftwareVersion	2.4-182401/2.4.0.1824
ms_polaritymode	MS Measurement Polarity	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.FULL MS / DD-MS² (TOPN).Polarity	Positive
ms_ionization	MS Ionization Type	author;miape	literal	Electrospray Ionization (ESI)	electrospray ionization (ESI)
ms_esisprayvoltage	MS Electrospray Voltage	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.SharedTuneData.Spray Voltage (+)	2300
ms_esicapillarytemp	MS Heated Capillary Temperature	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.SharedTuneData.Capillary Temperature (+ or +-)	275
ms_ms1analyzer	MS Analyzer Precursor Ion Spectrum (MS1)	author;miape;jpr_guidelines_ms	literal	orbitrap	orbitrap
ms_ms1datatype	MS Data Type Precursor Ion Spectrum (MS1)	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.Full MS.Spectrum data type	Profile
ms_ms1microscans	MS Micro Spectrums Precursor Ion Spectrum (MS1)	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.Full MS.Microscans	1
ms_ms1resolution	MS Resolution Precursor Ion Spectrum (MS1)	author;miape;jpr_guidelines_ms	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.Full MS.Resolution	70,000
ms_ms1resolutionmz	MS Resolution m/z Precursor Ion Spectrum (MS1)	author;miape	literal	200 m/z	200 m/z
ms_ms1scanrange	MS Mass Range Precursor Ion Spectrum (MS1)	author;miape;jpr_guidelines_ms	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.Full MS.Scan range	300 to 1750 m/z
ms_ms1iontarget	MS Ion Target Value Precursor Ion Spectrum (MS1)	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.Full MS.AGC target	3e6
ms_ms1iontime	MS Max. Injection Time Precursor Ion Spectrum (MS1)	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.Full MS.Maximum IT	20 ms
ms_ms2analyzer	MS Analyzer Fragment Ion Spectrum (MS2)	author;miape;jpr_guidelines_ms	literal	orbitrap	orbitrap
ms_ms2datatype	MS Data Type Fragment Ion Spectrum (MS2)	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd-MS² / dd-SIM.Spectrum data type	Profile
ms_ms2microscans	MS Micro Spectrums Fragment Ion Spectrum (MS2)	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd-MS² / dd-SIM.Microscans	1
ms_ms2fixedfirstmass	MS Fixed First m/z Fragment Ion Spectrum (MS2)	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd-MS² / dd-SIM.Fixed first mass	―
ms_ms2isolationwindow	MS Isolation Window Width Fragment Ion Spectrum (MS2)	author;miape;jpr_guidelines_ms	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd-MS² / dd-SIM.Isolation window	2.1 m/z
ms_ms2isolationwindowoffset	MS Isolation Window Offset Fragment Ion Spectrum (MS2)	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd-MS² / dd-SIM.Isolation offset	0.0 m/z
ms_ms2fragmentationmode	MS Fragmentation Mode (MS2)	author;miape;jpr_guidelines_ms	literal	Higher-energy collisional dissociation (HCD)	higher-energy collisional dissociation (HCD)
ms_ms2collisionenergy	MS Normalized Collision Energy Fragment Ion Spectrum (MS2)	author;miape;jpr_guidelines_ms	list_path	Instruments.Q Exactive - Orbitrap MS.Method.dd-MS² / dd-SIM.(N)CE / stepped (N)CE	25
ms_ms2resolution	MS Resolution Fragment Ion Spectrum (MS2)	author;miape;jpr_guidelines_ms	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd-MS² / dd-SIM.Resolution	17,500
ms_ms2resolutionmz	MS Resolution m/z Fragment Ion Spectrum (MS2)	author;miape	literal	200 m/z	200 m/z
ms_ms2iontarget	MS Ion Target Value Fragment Ion Spectrum (MS2)	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd-MS² / dd-SIM.AGC target	5e5
ms_ms2iontime	MS Max. Injection Time Fragment Ion Spectrum (MS2)	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd-MS² / dd-SIM.Maximum IT	60 ms
ms_ms2topn	MS Loop Count (Top n) Fragment Ion Spectrum (MS2)	author;miape;jpr_guidelines_ms	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd-MS² / dd-SIM.TopN	10
ms_ms2chargestatescreening	MS Charge States Excluded from Fragmentation	author;miape;jpr_guidelines_ms	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd Settings.Charge exclusion	unassigned, 1
ms_ms2minimumintensity	MS Minimum Peak Intensity for Fragmentation	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd Settings.Intensity threshold	8.3e3
ms_ms2apextrigger	MS Fragmentation Trigger on Peak Apex	author;miape	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd Settings.Apex trigger	―
ms_ms2dynamicexclusiontime	MS Dynamic Exclusion Length	author;miape;jpr_guidelines_ms	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd Settings.Dynamic exclusion	20.0 s
ms_ms2dynamicexclusionisotopes	MS Isotopologue Exclusion	author;miape;jpr_guidelines_ms	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd Settings.Exclude isotopes	on
ms_ms2dynamicexclusionpeptidemodel	MS Peptide Model for Excluded Isotope Clusters	author;miape;jpr_guidelines_ms	list_path	Instruments.Q Exactive Plus - Orbitrap MS.Method.dd Settings.Peptide match	On