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readcluster
Kai Schmid edited this page Mar 25, 2019
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readcluster(clustermember = block_member.csv, matrix = matrix, minclustersize = 9, minp.adjust = 0.01)| argument | function | default |
|---|---|---|
| clustermember | blockmember.csv file from Graph.pyhttps://github.molgen.mpg.de/loosolab/PARrOT/wiki/Graph.py | |
| matrix | matrix from calcscorematrix() | |
| minclustersize | minimum size of the cluster to be given to the enrichment analyses | 9 |
| minp.adjust | minimum p.adjust for the enrichment analyses | 0.01 |