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spike_in
Kai Schmid edited this page Mar 25, 2019
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spike_in(noise = 500, spike = 25, numberpatients = 500, proportion_noise = 0.7, proportion_spike = 0.7, overlap = 0.65, noise_FC = 2, spike_FC = 2, numberspikeins = 1)
argument | function | default |
---|---|---|
noise | number of bimodal genes in the noise | 500 |
spike | number of bimodal genes in the spike | 25 |
numberpatients | number of patients in both spike and noise | 500 |
proportion_noise | proportion of the bimodality in the noise | 0.7 |
proportion_spike | proportion of the bimodality in the spike | 0.7 |
overlap | enhanced overlap between the spike genes in % | 65 |
noise_FC | distance between the means of the modalities in the noise | 2 |
spike_FC | distance between the means of the modalities in the spike | 2 |
numberspikeins | number of not connected spikes to be added to the noise | 1 |