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.Rbuildignore -
.gitignore -
DESCRIPTION -
NAMESPACE -
R/paths.R -
ReporteR.scRNAseq.Rproj -
inst/bibliography.bib -
inst/content/01-intro-A-table.Rmd -
inst/content/01-intro.Rmd -
inst/content/02-quality-control-A-setup.Rmd -
inst/content/02-quality-control-B-pca.Rmd -
inst/content/02-quality-control-C-tsne.Rmd -
inst/content/02-quality-control-D-cellfiltering.Rmd -
inst/content/02-quality-control-E-genefiltering.Rmd -
inst/content/02-quality-control-G-saturation.Rmd -
inst/content/02-quality-control-Y-summary.Rmd -
inst/content/02-quality-control-Z-appendix.Rmd -
inst/content/02-quality-control.Rmd -
inst/content/03-normalization-A-sumfactors.Rmd -
inst/content/03-normalization-B-TMM.Rmd -
inst/content/03-normalization-C-scnorm.Rmd -
inst/content/03-normalization-Z-compare.Rmd -
inst/content/03-normalization.Rmd -
inst/content/04-feature-selection-A-cv2.Rmd -
inst/content/04-feature-selection-B-dropout.Rmd -
inst/content/04-feature-selection-C-fano.Rmd -
inst/content/04-feature-selection-Z-distance.Rmd -
inst/content/04-feature-selection.Rmd -
inst/content/05-dimension-reduction-A-pca.Rmd -
inst/content/05-dimension-reduction-B-tsne-dist.Rmd -
inst/content/05-dimension-reduction-C-som.Rmd -
inst/content/05-dimension-reduction-D-isomds.Rmd -
inst/content/05-dimension-reduction-E-rsvd.Rmd -
inst/content/05-dimension-reduction.Rmd -
inst/content/06-clustering-A-hdbscan.Rmd -
inst/content/06-clustering.Rmd -
inst/content/07-marker-A-individual.Rmd -
inst/content/07-marker-B-sets.Rmd -
inst/content/07-marker.Rmd -
inst/content/08-differential-expression-A-MAST.Rmd -
inst/content/08-differential-expression.Rmd -
inst/template.Rmd -
man/make_path_filtered_object.Rd