diff --git a/snakemake_pipeline/snakefiles/preprocessing.snake b/snakemake_pipeline/snakefiles/preprocessing.snake index 5637ae5..e28b6be 100644 --- a/snakemake_pipeline/snakefiles/preprocessing.snake +++ b/snakemake_pipeline/snakefiles/preprocessing.snake @@ -29,7 +29,8 @@ rule conditionbam: # Peak-calling gsizes = {"human":"hs", - "mouse":"mm"} + "mouse":"mm", + "zebrafish": 1369631918} #https://deeptools.readthedocs.io/en/develop/content/feature/effectiveGenomeSize.html rule macs: input: diff --git a/tobias/plotting/plot_aggregate.py b/tobias/plotting/plot_aggregate.py index fdb6110..4a1342d 100644 --- a/tobias/plotting/plot_aggregate.py +++ b/tobias/plotting/plot_aggregate.py @@ -63,7 +63,7 @@ def add_aggregate_arguments(parser): PLOT.add_argument('--log_transform', help="", action="store_true") PLOT.add_argument('--plot_boundaries', help="Plot TFBS boundaries", action='store_true') #PLOT.add_argument('--outliers', help="") - + RUN = parser.add_argument_group("Run arguments") RUN = add_logger_args(RUN)