From 14c109428ba769be7d2e6a28871951b6ba3fa86e Mon Sep 17 00:00:00 2001 From: Annika Fust Date: Tue, 20 Jun 2017 13:29:30 +0200 Subject: [PATCH] updated internals flag manual --- docs_rst/config.rst | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/docs_rst/config.rst b/docs_rst/config.rst index ad236bb..9c81abf 100644 --- a/docs_rst/config.rst +++ b/docs_rst/config.rst @@ -82,11 +82,11 @@ Each query can specify the following keys: - **internals**: This key represents a modifier with respect to the ``'distance'`` key. This can be helpful to annotate peaks to features with a wide size range, such as genes, which would otherwise be removed due to the distance thresholds. So even if the desired feature anchor is located too far away, a feature can still be included if it is overlapped. - 'center': If the center of a peak intersects with a feature region or vice versa, the ``'distance'`` key filtering is disabled. This parameter ensures that the majority of the peak intersects with the feature. + ``'center'``: If the center of a peak intersects with a feature region or vice versa, the ``'distance'`` key filtering is disabled. This parameter ensures that the majority of the peak intersects with the feature. - 'any': If a peak intersects with a feature region or vice versa, the ``'distance'`` key filtering is disabled. An overlap of >= 1 nt is sufficient. + ``'any'``: If a peak intersects with a feature region or vice versa, the ``'distance'`` key filtering is disabled. An overlap of >= 1 nt is sufficient. - 'none': Internals key is turned off. The ``'distance'`` key is active. + ``'none'``: Internals key is turned off. The ``'distance'`` key is active. Allowed values are one of ``'none', 'center', or 'any'.``