diff --git a/docs_rst/config.rst b/docs_rst/config.rst index 1d5049e..be366bd 100644 --- a/docs_rst/config.rst +++ b/docs_rst/config.rst @@ -81,8 +81,11 @@ Each query can specify the following keys: - **internals**: This key represents a modifier with respect to the ``'distance``' key. This can be helpful to annotate peaks to features with a wide size range, such as genes, which would otherwise be removed due to the distance thresholds. So even if the desired feature anchor is located too far away, a feature can still be included if it is overlapped. + 'center': If the center of a peak intersects with a feature region or vice versa, the ``'distance``' key filtering is disabled. This parameter ensures that the majority of the peak intersects with the feature. + 'any': If a peak intersects with a feature region or vice versa, the ``'distance``' key filtering is disabled. An overlap of >= 1 nt is sufficient. + Allowed values are one of ``'F', 'False', 'N', 'No'``, 'center', or 'any'. Default: ``'any'``