diff --git a/src/admire b/src/admire index d77fb51..c402443 100755 --- a/src/admire +++ b/src/admire @@ -390,7 +390,8 @@ for reg in "${R[@]}"; do continue fi mkdir -p $RESULTS/$N/$r - for b in $RESULTS/$N/*.pvals.bed; do + pvals = $(ls $RESULTS/$N/*.pvals.bed) + for b in $pvals; do p=`basename $b .bed` if [ ! -f $RESULTS/$N/$p.sorted.bed ]; then cat $b | tr -d '\r' | bedtools sort -i - > $RESULTS/$N/$p.sorted.bed