From e17e2c92637e41d7e524f470d5b8b29f555e3f05 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jens=20Preu=C3=9Fner?= <jens.preussner@mpi-bn.mpg.de>
Date: Tue, 29 Mar 2016 15:29:34 +0200
Subject: [PATCH] Defused a potential breaking for loop on unfixed number of
 files

---
 src/admire | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/src/admire b/src/admire
index d77fb51..c402443 100755
--- a/src/admire
+++ b/src/admire
@@ -390,7 +390,8 @@ for reg in "${R[@]}"; do
 		continue
 	fi
 	mkdir -p $RESULTS/$N/$r
-	for b in $RESULTS/$N/*.pvals.bed; do
+	pvals = $(ls $RESULTS/$N/*.pvals.bed)
+	for b in $pvals; do
 		p=`basename $b .bed`
 		if [ ! -f $RESULTS/$N/$p.sorted.bed ]; then
 			cat $b | tr -d '\r' | bedtools sort -i - > $RESULTS/$N/$p.sorted.bed