From f4381854096e6147ba34ee4c2972a7ebe2b237d5 Mon Sep 17 00:00:00 2001 From: jenzopr Date: Wed, 5 Aug 2015 09:23:27 +0200 Subject: [PATCH] Customized geneset locations for galaxy --- admire_genesets.loc | 28 ++++++++++++++-------------- 1 file changed, 14 insertions(+), 14 deletions(-) diff --git a/admire_genesets.loc b/admire_genesets.loc index d8d7dc1..8b0dadf 100644 --- a/admire_genesets.loc +++ b/admire_genesets.loc @@ -1,14 +1,14 @@ -c1.all c1.all C1: Positional gene sets (by chromosome, 326) genesets/c1.all.v5.0.symbols.gmt -c2.cgp c2.cgp C2: Chemical and genetic pertubations (3395) genesets/c2.cpg.v5.0.symbols.gmt -c2.cp.biocarta c2.cp.biocarta C2: BioCharta canonical pathways (217) genesets/c2.cp.biocarta.v5.0.symbols.gmt -c2.cp.kegg c2.cp.kegg C2: KEGG gene sets (186) genesets/c2.cp.kegg.v5.0.symbols.gmt -c2.cp.reactome c2.cp.reactome C2: Reactome gene sets (674) genesets/c2.cp.reactome.v5.0.symbols.gmt -c3.tft c3.tft C3: transcription factor targets (615) genesets/c3.tft.v5.0.symbols.gmt -c4.cgn c4.cgn C4: Cancer gene neighborhoods (427) genesets/c4.cgn.v5.0.symbols.gmt -c4.cm c4.cm C4: Cancer modules (431) genesets/c4.cm.v5.0.symbols.gmt -c5.bp c5.bp C5: GO biological process (825) genesets/c5.bp.v5.0.symbols.gmt -c5.cc c5.cc C5: GO cellular component (233) genesets/c5.cc.v5.0.symbols.gmt -c5.mf c5.mf C5: GO molecular function (396) genesets/c5.mf.v5.0.symbols.gmt -c6 c6 C6: Oncogenic signatures (189) genesets/c6.all.v5.0.symbols.gmt -c7 c7 C7: Immunologic signatures (1910) genesets/c7.all.v5.0.symbols.gmt -h h H: Hallmark gene sets (50) genesets/h.all.v5.0.symbols.gmt +c1.all c1.all C1: Positional gene sets (by chromosome, 326) /home/mirna/galaxy-dist/tools/admire/genesets/c1.all.v5.0.symbols.gmt +c2.cgp c2.cgp C2: Chemical and genetic pertubations (3395) /home/mirna/galaxy-dist/tools/admire/genesets/c2.cpg.v5.0.symbols.gmt +c2.cp.biocarta c2.cp.biocarta C2: BioCharta canonical pathways (217) /home/mirna/galaxy-dist/tools/admire/genesets/c2.cp.biocarta.v5.0.symbols.gmt +c2.cp.kegg c2.cp.kegg C2: KEGG gene sets (186) /home/mirna/galaxy-dist/tools/admire/genesets/c2.cp.kegg.v5.0.symbols.gmt +c2.cp.reactome c2.cp.reactome C2: Reactome gene sets (674) /home/mirna/galaxy-dist/tools/admire/genesets/c2.cp.reactome.v5.0.symbols.gmt +c3.tft c3.tft C3: transcription factor targets (615) /home/mirna/galaxy-dist/tools/admire/genesets/c3.tft.v5.0.symbols.gmt +c4.cgn c4.cgn C4: Cancer gene neighborhoods (427) /home/mirna/galaxy-dist/tools/admire/genesets/c4.cgn.v5.0.symbols.gmt +c4.cm c4.cm C4: Cancer modules (431) /home/mirna/galaxy-dist/tools/admire/genesets/c4.cm.v5.0.symbols.gmt +c5.bp c5.bp C5: GO biological process (825) /home/mirna/galaxy-dist/tools/admire/genesets/c5.bp.v5.0.symbols.gmt +c5.cc c5.cc C5: GO cellular component (233) /home/mirna/galaxy-dist/tools/admire/genesets/c5.cc.v5.0.symbols.gmt +c5.mf c5.mf C5: GO molecular function (396) /home/mirna/galaxy-dist/tools/admire/genesets/c5.mf.v5.0.symbols.gmt +c6 c6 C6: Oncogenic signatures (189) /home/mirna/galaxy-dist/tools/admire/genesets/c6.all.v5.0.symbols.gmt +c7 c7 C7: Immunologic signatures (1910) /home/mirna/galaxy-dist/tools/admire/genesets/c7.all.v5.0.symbols.gmt +h h H: Hallmark gene sets (50) /home/mirna/galaxy-dist/tools/admire/genesets/h.all.v5.0.symbols.gmt