diff --git a/LimiTT.xml b/LimiTT.xml index 20de0c5..cfc27c0 100644 --- a/LimiTT.xml +++ b/LimiTT.xml @@ -414,6 +414,18 @@ The file lists for each MTI set, the targets which overlap with the ranked list +--------+------+--------------------+----------+---------+ | + +------------ + +.. class:: infomark + +**See LimiTT in action** + +Browse to the shared data library to load example files for LimiTT into galaxy. +The given annotation file was used to benchmark LimiTT and it contains PH-relevant genes from Bertero et al. (2014). +To reproduce the benchmarking, choose the LimiTT tool, click on "Add annotation file" and use the LimiTT_annotation.txt as input into the pipeline. +Next, change the "Description of additional information" field from "Transcript" to "Functional Pathway". +Change the "Occurrence of MTIs over DBs" value to 1. Select "Homo sapiens" as species. Hit "Execute" to see the tool in action. </help> <citations> <citation type="doi">10.1093/database/bar009</citation>