From e0f5886670f806acd3e01389d197e1710b271a2b Mon Sep 17 00:00:00 2001
From: jenzopr <jens.preussner@mpi-bn.mpg.de>
Date: Thu, 2 Jul 2015 12:34:05 +0200
Subject: [PATCH] Added help for example usage.

---
 LimiTT.xml | 12 ++++++++++++
 1 file changed, 12 insertions(+)

diff --git a/LimiTT.xml b/LimiTT.xml
index 20de0c5..cfc27c0 100644
--- a/LimiTT.xml
+++ b/LimiTT.xml
@@ -414,6 +414,18 @@ The file lists for each MTI set, the targets which overlap with the ranked list
 +--------+------+--------------------+----------+---------+
 
 |
+
+------------
+
+.. class:: infomark
+
+**See LimiTT in action**
+
+Browse to the shared data library to load example files for LimiTT into galaxy.
+The given annotation file was used to benchmark LimiTT and it contains PH-relevant genes from Bertero et al. (2014). 
+To reproduce the benchmarking, choose the LimiTT tool, click on "Add annotation file" and use the LimiTT_annotation.txt as input into the pipeline.
+Next, change the "Description of additional information" field from "Transcript" to "Functional Pathway".
+Change the "Occurrence of MTIs over DBs" value to 1. Select "Homo sapiens" as species. Hit "Execute" to see the tool in action.
     </help>
     <citations>
         <citation type="doi">10.1093/database/bar009</citation>