From f9bcce208db7eddc5bd9d22bd6f3d4bb056a4600 Mon Sep 17 00:00:00 2001 From: jenzopr Date: Fri, 3 Jul 2015 09:11:02 +0200 Subject: [PATCH] Moved example to top --- LimiTT.xml | 24 +++++++++++++----------- 1 file changed, 13 insertions(+), 11 deletions(-) diff --git a/LimiTT.xml b/LimiTT.xml index cfc27c0..8a82740 100644 --- a/LimiTT.xml +++ b/LimiTT.xml @@ -201,6 +201,19 @@ + +.. class:: infomark + +**See LimiTT in action** + +Browse to the shared data library to load example files for LimiTT into galaxy. +The given annotation file was used to benchmark LimiTT and it contains PH-relevant genes from Bertero et al. (2014). +To reproduce the benchmarking, choose the LimiTT tool, click on "Add annotation file" and use the LimiTT_annotation.txt as input into the pipeline. +Next, change the "Description of additional information" field from "Transcript" to "Functional Pathway". +Change the "Occurrence of MTIs over DBs" value to 1. Select "Homo sapiens" as species. Hit "Execute" to see the tool in action. + +------------ + .. class:: infomark **Input Files:** @@ -415,17 +428,6 @@ The file lists for each MTI set, the targets which overlap with the ranked list | ------------- - -.. class:: infomark - -**See LimiTT in action** - -Browse to the shared data library to load example files for LimiTT into galaxy. -The given annotation file was used to benchmark LimiTT and it contains PH-relevant genes from Bertero et al. (2014). -To reproduce the benchmarking, choose the LimiTT tool, click on "Add annotation file" and use the LimiTT_annotation.txt as input into the pipeline. -Next, change the "Description of additional information" field from "Transcript" to "Functional Pathway". -Change the "Occurrence of MTIs over DBs" value to 1. Select "Homo sapiens" as species. Hit "Execute" to see the tool in action. 10.1093/database/bar009