From 02b7fc8b78f9934a694d4cb1a990a259142f8091 Mon Sep 17 00:00:00 2001 From: anastasiia Date: Wed, 21 Nov 2018 11:30:05 +0100 Subject: [PATCH] deleting of an unused function --- call_peaks.py | 17 ----------------- 1 file changed, 17 deletions(-) diff --git a/call_peaks.py b/call_peaks.py index 64c9a22..191b20a 100644 --- a/call_peaks.py +++ b/call_peaks.py @@ -129,23 +129,6 @@ def make_bed_dictionary(bed_file): return bed_dictionary -#unbenutzt -def find_window(bed_file): - - #chromosom = 1 #start with the first chromosom - window_length = 0 - - with open(bed_file) as read_bed_file: - for bed_line in read_bed_file: - bed_line_array = re.split(r'\t', bed_line.rstrip('\n')) - if bed_line_array[1].isdigit() and bed_line_array[2].isdigit() and int(bed_line_array[1]) <= int(bed_line_array[2]): #in the real bedfile the second column is a start position, and the third column is an end position, so we are checking if these are integers and if the start position is smaller than the end one - #if chromosom == int(bed_line_array[0]): - peak_len = int(bed_line_array[2]) - int(bed_line_array[1]) - if peak_len > window_length: - window_length = peak_len - - print(window_length) - def save_footprint(footprint_count, footprint_scores, peak_footprints, chromosom, footprint_start, footprint_end, bonus_info_from_bed): save_current_footprint = False