From 1285f1a7c819338caab6465aedc2106015cf11aa Mon Sep 17 00:00:00 2001 From: basti Date: Tue, 4 Dec 2018 14:53:15 +0100 Subject: [PATCH] Changed Paths --- bin/RegGTFExtractor.py | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/bin/RegGTFExtractor.py b/bin/RegGTFExtractor.py index c3f669b..373f435 100644 --- a/bin/RegGTFExtractor.py +++ b/bin/RegGTFExtractor.py @@ -8,14 +8,14 @@ import os -def check_for_local_folder(): +def check_for_local_folder(wd): - if not os.path.isdir("./EnsemblData"): + if not os.path.isdir(os.path.join(wd, "/EnsemblData")): - os.mkdir("./EnsemblData") + os.mkdir(os.path.join(wd, "/EnsemblData")) - if not os.path.isdir( "./UCSCData" ): - os.mkdir( "./UCSCData" ) + if not os.path.isdir(os.path.join(wd, "/UCSCData" )): + os.mkdir(os.path.join(wd, "/UCSCData" )) def main_script(org, wd, tissuetype=None):