diff --git a/pipeline.nf b/pipeline.nf index 1be18be..f5f709c 100644 --- a/pipeline.nf +++ b/pipeline.nf @@ -9,7 +9,7 @@ params.tfbs_path="" params.create_known_tfbs_path = "./" params.help = 0 - params.get_path="" + params.gtf_path="" params.out = "./out/" //peak_calling @@ -583,7 +583,7 @@ process create_GTF { file ('*.gtf') into gtf when: - gtf_path == "" + params.gtf_path == "" script: """ @@ -591,7 +591,7 @@ process create_GTF { """ } -if (gtf_path == "") { +if (params.gtf_path == "") { gtf_for_uropa = gtf } else { gtf_for_uropa = Channel.fromPath(params.gtf_path)