From 13bccdafbb5ab5d4c8f2e43304167ad564a50106 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Ren=C3=A9=20Wiegandt?= <rene.wiegandt@mpi-bn.mpg.de>
Date: Fri, 21 Dec 2018 06:46:11 -0500
Subject: [PATCH] Fixed bug in pipeline.nf: parameter gtf_path is now working

---
 pipeline.nf | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pipeline.nf b/pipeline.nf
index 1be18be..f5f709c 100644
--- a/pipeline.nf
+++ b/pipeline.nf
@@ -9,7 +9,7 @@
 	params.tfbs_path=""
 	params.create_known_tfbs_path = "./"
 	params.help = 0
-	params.get_path=""
+	params.gtf_path=""
 	params.out = "./out/"
 
 //peak_calling
@@ -583,7 +583,7 @@ process create_GTF {
 	file ('*.gtf') into gtf
 
 	when:
-	gtf_path == ""
+	params.gtf_path == ""
 
 	script:
 	"""
@@ -591,7 +591,7 @@ process create_GTF {
 	"""
 }
 
-if (gtf_path == "") {
+if (params.gtf_path == "") {
 	gtf_for_uropa = gtf
 } else {
 	gtf_for_uropa = Channel.fromPath(params.gtf_path)