diff --git a/README.md b/README.md index f36beca..994029a 100644 --- a/README.md +++ b/README.md @@ -8,7 +8,14 @@ De novo motif discovery and evaluation based on footprints identified by TOBIAS * [MEME-Suite](http://meme-suite.org/doc/install.html?man_type=web) ## Installation -Start with installing all dependencies listed above. +Start with installing all dependencies listed above. It is required to set the [enviroment paths for meme-suite](http://meme-suite.org/doc/install.html?man_type=web#installingtar). +this can be done with following commands: +``` +export PATH=[meme-suite instalation path]/libexec/meme-[meme-suite version]:$PATH +export PATH=[meme-suite instalation path]/bin:$PATH +``` + + Download all files from the [GitHub repository](https://github.molgen.mpg.de/loosolab/masterJLU2018). The Nextflow-script needs a conda enviroment to run. Nextflow can create the needed enviroment from the given yaml-file. On some systems Nrxtflow exits the run with following error: