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Merge pull request #68 from loosolab/peak_calling
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Peak calling to dev
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renewiegandt authored Jan 14, 2019
2 parents d991ea8 + 6258bfe commit 2e7e2e8
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Expand Up @@ -69,7 +69,7 @@ Optional arguments:
--window_length INT This parameter sets the length of a sliding window. (Default: 200)
--step INT This parameter sets the number of positions to slide the window forward. (Default: 100)
--percentage INT Threshold in percent (Default: 0)
--max_bp_between INT If footprints are less than X bases appart the footprints will be merged (Default: 6)
--min_gap INT If footprints are less than X bases appart the footprints will be merged (Default: 6)
Filter motifs:
--min_size_fp INT Minimum sequence length threshold. Smaller sequences are discarded. (Default: 10)
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